Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq230650 159 3e-34 >seq230650 Length=142828 Score = 159 bits (176), Expect = 3e-34 Identities = 353/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893 ||| ||||||| ||||| ||||| |||| | ||| ||| || | ||||||| | | Sbjct 94602 AGTCTGGGAAACGGTCTCGGCTCTCTCTTCATCTGCGTCGACAAAGCGTCCACGTGGTTC 94661 Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 | ||||||||| ||||| || || ||| | | | | || |||| | || |||||| Sbjct 94662 AAGTAGACGTGCGCGTCCCCGAGCGAGTGAATCAGCGCCCCGGGTTTGTGTCCCGTGACG 94721 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || || | |||| || || | | || |||||||| || || || |||||||||||| Sbjct 94722 TGGGCAACCATGCGGGTCAGTATCGCATAACTGGCGATATTGAACGGCACCCCGAGCCCC 94781 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCGTCGCTC-----ACGTAA 30067 ||||| | ||||||||||| | || ||||| | || || | || | || | Sbjct 94782 ATGTCAGCGGACCTCTGGTACAACTTGCACGACAAATCGTCGGAGGCGCGGTCGACATGG 94841 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 ||||| || |||||||||||| || |||||||| || || ||||||||| Sbjct 94842 AACTGCATCAGACAGTGGCACGGAGGCAGCGCCATGAGCGGCACATCGCGCGGGTTCCAG 94901 Query 30128 GCGCACACGATGATGCGCCT-GTCTTCTGGGTTGTTCCTGAT-GAGGTCCACGGCGTTTT 30185 || ||| | | |||| || | || || || | | ||| || | | ||| Sbjct 94902 GCCACCACCA-GGTGCGTCTCGGTGTCCGGATTCTCGCGGATCGATCT-AATCACGTGCC 94959 Query 30186 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGA 30245 ||||| || | ||| || | ||| || | | | |||| |||||| || |||| Sbjct 94960 CGAGCTGGTCGAATCCCTGGCCGGTGTAATCGGTGCGCTTGTCGCGGTACTCGGCCCCGA 95019 Query 30246 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30305 |||| ||||||||||||||||||||||| || || || ||| ||||| ||| ||| | Sbjct 95020 AATGTCTCCACTGGAACCCGTACACCGGCCCGAGATCGCCCGGTTCCCGATGCCCGAGCC 95079 Query 30306 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30348 | | | |||| || ||| || ||||| |||||||| || Sbjct 95080 CGCGACTCTCCAGGAACTCTTTGCTGCCGTTCGCGTCCCAAAT 95122 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/202 (71%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTC--TTCAGCGGTTCCACGTTAT 29891 ||| | ||||| ||||| ||||| |||| | ||| ||| | |||| ||||||| | Sbjct 56071 AGTCTTGGAAACGGTCTCGGCTCTCTCTTCATCTGCGTCGATAAAGCG--TCCACGTGGT 56014 Query 29892 CCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 || |||||||| |||||||| || ||| | | | | | |||| | || |||| Sbjct 56013 TTAG-TAGACGTGCGCGTCTCCGAGA--GTGAATCAGCGCCACGGGTTTGTGTCCCGTGA 55957 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 |||| || | |||| || || | | ||| |||||||| ||||| ||||||| ||||| Sbjct 55956 CGTGGGCGACCATGCGGGTCAGTATCGCGTAACTGGCGATATTAAACGGTACCCTGAGCC 55897 Query 30012 CCATGTCCCCCGACCTCTGGTA 30033 |||| | | ||||||||||| Sbjct 55896 CCATATAAGCGGACCTCTGGTA 55875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405046405675368