Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq230650 129 5e-25 >seq230650 Length=142828 Score = 129 bits (142), Expect = 5e-25 Identities = 385/583 (66%), Gaps = 16/583 (3%) Strand=Plus/Plus Query 6449 AAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGG 6508 ||||||||| | |||||| || || || |||| || || ||||| ||| Sbjct 94551 AAGTCCTCGTACTGAAAGTCTTCAATGTCTGTCACGGATCTCCGAAACTTGAGTCTGGGA 94610 Query 6509 AACGGTCGGGGCTCTCGTTGCAGCTGGATC--CGGAGCCGCTCGATGTGGTTCAGGTAGA 6566 ||||||| ||||||| | || ||| || | ||| || | |||||||| ||||| Sbjct 94611 AACGGTCTCGGCTCTCTCTTCATCTGCGTCGACAAAGCG--TCCACGTGGTTCAAGTAGA 94668 Query 6567 TATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGA 6626 ||||| ||||| | || || | |||| |||| || ||| ||| || || | Sbjct 94669 CGTGCGCGTCCCCGAGCGAGTGAATCAGCGCCCCGGGTTTGTGTCCCGTGACGTGGGCAA 94728 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| || || | || ||||| || || |||||||||||||| | ||||||||| Sbjct 94729 CCATGCGGGTCAGTATCGCATAACTGGCGATATTGAACGGCACCCCGAGCCCCATGTCAG 94788 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTC--CCCATTCG----CGACGTAGAATTGGC 6740 | || | || || | || ||| |||| || | | || |||| | ||| || Sbjct 94789 CGGACCTCTGGTACAACTTGCACGACAAATCGTCGGAGGCGCGGTCGACATGGAACTGCA 94848 Query 6741 AGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACA 6800 || ||||||||| || |||||||| || || | ||| ||||||||| || ||| Sbjct 94849 TCAGACAGTGGCACGGAGGCAGCGCCATGAGCGGCACATCGCGCGGGTTCCAGGC-CACC 94907 Query 6801 TCACGATCCTTCT-GTCATCAGGGTTC-CGCTTCAAGGTGTCGATCACGTACTGCAGCTG 6858 | | | | ||| | || || ||| ||| | | | ||||||| | ||||| Sbjct 94908 ACCAGGTGCGTCTCGGTGTCCGGATTCTCGCGGATCGATCT-AATCACGTGCCCGAGCTG 94966 Query 6859 GTCCGCTCCCTGTCCCGAATAGTCCGCTTCGC-TCCCCCGATACTCCGCCCCAAAGTGTC 6917 ||| |||||| || | || | || | ||| | | || ||||| ||||| || |||| Sbjct 94967 GTCGAATCCCTGGCCGGTGTAAT-CGGTGCGCTTGTCGCGGTACTCGGCCCCGAAATGTC 95025 Query 6918 TCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCT 6977 |||||||||||||||| ||||| || | |||||| |||||| || ||| || Sbjct 95026 TCCACTGGAACCCGTACACCGGCCCGAGATCGCCCGGTTCCCGATGCCCGAGCCCGCGAC 95085 Query 6978 TGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 | ||||| || ||| |||| |||||||| || | ||| Sbjct 95086 TCTCCAGGAACTCTTTGCTGCCGTTCGCGTCCCAAATGTGCAC 95128 Score = 129 bits (142), Expect = 5e-25 Identities = 385/583 (66%), Gaps = 16/583 (3%) Strand=Plus/Minus Query 34325 GTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCT 34384 ||| | || |||||||| |||| ||| || ||||| | || ||| || | Sbjct 95128 GTGCACATTTGGGACGCGAACGGCAGCAAAGAGTTCCTGGAGAGTCGCGGGCTCGGGCAT 95069 Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 ||||| |||||| | || ||||| |||||||||||||||||||| || ||||| ||| Sbjct 95068 CGGGAACCGGGCGATCTCGGGCCGGTGTACGGGTTCCAGTGGAGACATTTCGGGGCCGAG 95009 Query 34445 TATCGGGGGA-GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT 34503 || || | | ||| | || | || | || |||||| |||||||| | ||||||| Sbjct 95008 TACCGCGACAAGCGCACCG-ATTACACCGGCCAGGGATTCGACCAGCTCGGGCACGTGAT 94950 Query 34504 CGACACCTTGAAGCG-GAACCCTGATGAC-AGAAGGATCGTGATGTGCGCGTGGAACCCG 34561 | | | ||| ||| || || | ||| | | | | ||| || ||||||||| Sbjct 94949 T-AGATCGATCCGCGAGAATCCGGACACCGAGACGCACCTGGTGGTG-GCCTGGAACCCG 94892 Query 34562 AAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG-- 34619 ||| | || || |||||||| || ||||||||| || || ||| | |||| Sbjct 94891 CGCGATGTGCCGCTCATGGCGCTGCCTCCGTGCCACTGTCTGATGCAGTTCCATGTCGAC 94832 Query 34620 --CGAATGGG--GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGG 34675 || | | || |||| ||| || | || || | || | ||||||||| | ||| Sbjct 94831 CGCGCCTCCGACGATTTGTCGTGCAAGTTGTACCAGAGGTCCGCTGACATGGGGCTCGGG 94772 Query 34676 GTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGG 34735 ||||||||||| || || ||||| || | || || |||| | || || ||| ||| Sbjct 94771 GTGCCGTTCAATATCGCCAGTTATGCGATACTGACCCGCATGGTTGCCCACGTCACGGGA 94712 Query 34736 TTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATC 34795 || |||| |||| | || || | ||||| ||||| ||||| |||||||| | Sbjct 94711 CACAAACCCGGGGCGCTGATTCACTCGCTCGGGGACGCGCACGTCTACTTGAACCACGTG 94652 Query 34796 GAGCGGCTCCG--GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853 || ||| | || ||| || | ||||||| ||||||| ||| ||||| || Sbjct 94651 GA--CGCTTTGTCGACGCAGATGAAGAGAGAGCCGAGACCGTTTCCCAGACTCAAGTTTC 94594 Query 34854 TTCGAGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTT 34896 || |||| || || || |||||| | ||||||||| Sbjct 94593 GGAGATCCGTGACAGACATTGAAGACTTTCAGTACGAGGACTT 94551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446832140366880