Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq211385 122 7e-23 seq12314 120 3e-22 seq247670 114 1e-20 seq201504 111 1e-19 seq243336 105 6e-18 seq217494 89.7 4e-13 >seq211385 Length=3642 Score = 122 bits (134), Expect = 7e-23 Identities = 182/256 (71%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 |||||||| || || | || ||||||||| ||||| |||||||| || || || || Sbjct 2068 AATATAAGAATCAATCAACAGTGAATACATTTCTGAATGAATATTTTCCATTGCTATTTG 2009 Query 4877 AAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTA 4935 || | |||||| || ||| ||||| | | || ||||| || |||||||||| | | Sbjct 2008 GAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCA 1950 Query 4936 AGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 | ||||| || ||||| || ||||||||||| ||||| || | ||||| || || || | Sbjct 1949 AATTTTCATTAACTATTCCATCACTGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAAT 1890 Query 4996 ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTT 5055 ||||| || || || | | ||||| |||||| | |||| | ||||| Sbjct 1889 GTTGTTCTTCCGGTTTTAAGTCGTTCCA------TCTATCTTTCGACAAATTTATTTCTT 1836 Query 5056 CAACAGTCCAAAACGA 5071 |||| |||||||| || Sbjct 1835 CAACTGTCCAAAAGGA 1820 >seq12314 Length=2576 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTT 4899 ||||||||| ||||| |||||||| || || || || || | |||||| || ||| |||| Sbjct 1599 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 1657 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | | || ||||| || |||||||||| | || ||||| || ||||| || |||| Sbjct 1658 CCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCAC 1717 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTT 5019 ||||||| ||||| || | ||||| || || || | ||||| || || || | | | Sbjct 1718 TGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGGTTTTAAGTCGT 1777 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 |||| |||||| | |||| | ||||||||| |||||||| || Sbjct 1778 TCCA------TCTATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGA 1823 >seq247670 Length=3146 Score = 114 bits (126), Expect = 1e-20 Identities = 179/252 (71%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGT---TA 4595 || ||||| |||||||||||||| |||||||| ||||||| || || | |||| || Sbjct 584 AATAATAAGCACGCAAAATCACAGTGCAAACCCTCGTCTCGACTGATAAACTCGTTACTA 643 Query 4596 GAAAACGTTAATCCGGGCATTAAACCTCTCTT-TTTAAGCCAAAATATAGCGGCAAATGA 4654 ||| || | ||| ||||||||| || |||| ||| ||||| ||||||| ||||| Sbjct 644 GAACAC---AGTCCAGGCATTAAATCT-TCTTGTTTCAGCCAGAATATAGATGCAAAACT 699 Query 4655 CCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCT 4714 ||| ||||| || || || || || ||||| || || || || || |||| | Sbjct 700 GCCACTGAAGAAGATTCCCTCGACCGCAGCAAAAGCGACCAACCGTAACGCGAAGGTCGA 759 Query 4715 GGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT 4774 |||| |||| |||||| | |||||| | ||| || || || || ||||| | || Sbjct 760 TTCTTTATCTTCAATCCAACGAATTGCCCATTCAGCCTTCTTTTTGACACACGGTAGAGT 819 Query 4775 GTATATAGCGTT 4786 | ||| ||||| Sbjct 820 TTGTATTGCGTT 831 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTT 4899 ||||||||| ||||| | |||||| || || || || || | |||||| || ||| |||| Sbjct 944 ATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 1002 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | | || ||||| | |||||||||| | | || || || || || || |||| Sbjct 1003 CCGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCAC 1062 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTT 5019 |||| ||||||||||| | ||||| || || || ||||| | || | | | | || | Sbjct 1063 TGGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGATCCGACGTTAATTCGT 1122 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 |||| ||| || ||||||| | ||||||||| |||||||| || | | | Sbjct 1123 TCCA------TCTATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGAATCAACAG 1176 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACT 5112 | | || ||||| ||||||| || |||| Sbjct 1177 CCTGTTCATACATTTGAAAAATATCCGGGTACT 1209 >seq201504 Length=1836 Score = 111 bits (122), Expect = 1e-19 Identities = 178/252 (71%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTA--- 4595 || ||||| || ||||| ||||| |||||||| ||||||| || || | |||||| Sbjct 934 AATAATAAGCATGCAAAGTCACAGTGCAAACCCTCGTCTCGACTGATAAACTCGTTACTA 875 Query 4596 GAAAACGTTAATCCGGGCATTAAACCTCTCTT-TTTAAGCCAAAATATAGCGGCAAATGA 4654 ||| || | ||| |||||||||||| |||| ||| ||||| ||||||| ||||| Sbjct 874 GAACAC---AGTCCAGGCATTAAACCT-TCTTGTTTCAGCCAGAATATAGATGCAAAACT 819 Query 4655 CCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCT 4714 ||| ||||| || || || || || ||||| || || || || || |||| | Sbjct 818 GCCACTGAAGAAGATTCCCTCGACCGCAGCAAAAGCGACCAACCGTAACGCGAAGGTCGA 759 Query 4715 GGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT 4774 |||| |||| |||||| | |||||| | ||| || || || || ||||| | || Sbjct 758 TTCTTTATCTTCAATCCAACGAATTGCCCATTCAGCCTTCTTTTTGACACACGGTAGAGT 699 Query 4775 GTATATAGCGTT 4786 | ||| ||||| Sbjct 698 TTGTATTGCGTT 687 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTT 4899 ||||||||| ||||| | |||||| || || || || || | |||||| || ||| |||| Sbjct 574 ATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 516 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | | || ||||| | |||||||||| | | || || || || || || |||| Sbjct 515 CCGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCAC 456 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTT 5019 |||| ||||||||||| | ||||| || || || ||||| | || | | | | || | Sbjct 455 TGGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGATCCGACGTTAATTCGT 396 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 |||| ||| || ||||||| | ||||||||| |||||||| || Sbjct 395 TCCA------TCTATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGA 350 >seq243336 Length=1505 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTT 4899 ||||||||| ||||| | |||||| || || || || || | |||||| || ||| |||| Sbjct 31 ATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 89 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | | || ||||| | |||||||||| | | || || || || || || |||| Sbjct 90 CCGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCAC 149 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTT 5019 |||| ||||||||||| | ||||| || || || ||||| | || | | | | || | Sbjct 150 TGGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGATCCGACGTTAATTCGT 209 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 |||| ||| || ||||||| | ||||||||| |||||||| || Sbjct 210 TCCA------TCTATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGA 255 >seq217494 Length=14875 Score = 89.7 bits (98), Expect = 4e-13 Identities = 177/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 4525 TTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAA 4584 |||| || ||| ||||| || || || || ||||| || | || ||||||||||| | Sbjct 7261 TTACCAAATATTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTCGTCTCTGCTGA 7202 Query 4585 TCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAG 4644 |||| || || || | || ||||| || || | || || ||||||||||| | Sbjct 7201 TCAGCTCATTGCTGAAGCAAAGACCTGGCATCAATCCGCGTTTCTTCAGCCAAAATATTG 7142 Query 4645 CGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACC 4704 ||| || ||| ||||| || ||||| ||||| ||||| || |||| |||| | Sbjct 7141 AGGCGAAGCTGCCACTGAAGAAGATCCCTTCCACGGCAGCAAAAGCAACTACTCGGATTC 7082 Query 4705 CGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGC 4764 |||| | | || | || ||||| || ||||| | ||| ||||| | ||| | Sbjct 7081 CGAATGTGGACTCTCTATCGGAGATCCAACGTAGAGCCCATTCAGCCTTTTTTTGAACAC 7022 Query 4765 ACGGAATTGTGTATATAGCGTT 4786 |||| || || ||| ||||| Sbjct 7021 ACGGCATCGTTCTTATGGCGTT 7000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425721087929582