Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq230650 158 9e-34 >seq230650 Length=142828 Score = 158 bits (174), Expect = 9e-34 Identities = 365/541 (67%), Gaps = 12/541 (2%) Strand=Plus/Plus Query 27100 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 27159 ||| ||||||| ||||| ||||| |||| | ||| ||| || | |||||||| | | Sbjct 94602 AGTCTGGGAAACGGTCTCGGCTCTCTCTTCATCTGCGTCGACAAAGCGTCCACGTGGTTC 94661 Query 27160 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 27219 | ||||||||| ||||| || || | ||| | | | | || |||| | || |||||| Sbjct 94662 AAGTAGACGTGCGCGTCCCCGAGCGAGTGAATCAGCGCCCCGGGTTTGTGTCCCGTGACG 94721 Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || || | |||| || || | | || |||||||| || || || |||||||||||| Sbjct 94722 TGGGCAACCATGCGGGTCAGTATCGCATAACTGGCGATATTGAACGGCACCCCGAGCCCC 94781 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TC-----CATCGCTTACGTAA 27333 ||||| | ||||||||||| | || ||||| | || || | | || | Sbjct 94782 ATGTCAGCGGACCTCTGGTACAACTTGCACGACAAATCGTCGGAGGCGCGGTCGACATGG 94841 Query 27334 AACTGACATATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||||| ||| | | |||||||||||| || |||||||| || || |||||||| Sbjct 94842 AACTG-CATCAGACAGTGGCACGGAGGCAGCGCCATGAGCGGCACATCGCGCGGGTTCCA 94900 Query 27393 GGCGCACACGATGATGCGCCT-GTCTTCTGGGTTGTTCCTGAT-GAGGTCCACGGCGTTT 27450 ||| ||| | | |||| || | || || || | | ||| || | | ||| Sbjct 94901 GGCCACCACCA-GGTGCGTCTCGGTGTCCGGATTCTCGCGGATCGATCT-AATCACGTGC 94958 Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCG 27510 ||||| || | ||| || | ||| || | | |||| |||||| || ||| Sbjct 94959 CCGAGCTGGTCGAATCCCTGGCCGGTGTAATCGGTGCGCTTGTCGCGGTACTCGGCCCCG 95018 Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 27570 ||||| ||||| ||||||||||||||||| || || || ||| ||||| ||| ||| Sbjct 95019 AAATGTCTCCACTGGAACCCGTACACCGGCCCGAGATCGCCCGGTTCCCGATGCCCGAGC 95078 Query 27571 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 27630 || | | |||| || ||| || ||||| |||||||| || | || ||||||| Sbjct 95079 CCGCGACTCTCCAGGAACTCTTTGCTGCCGTTCGCGTCCCAAATGTGCACGTTCTTCTCG 95138 Query 27631 G 27631 | Sbjct 95139 G 95139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/202 (72%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 27100 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTC--TTCAGCGGTTCCACGTGAT 27157 ||| | ||||| ||||| ||||| |||| | ||| ||| | |||| |||||||| | Sbjct 56071 AGTCTTGGAAACGGTCTCGGCTCTCTCTTCATCTGCGTCGATAAAGCG--TCCACGTGGT 56014 Query 27158 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 27217 || |||||||| |||||||| || ||| | | | | | |||| | || |||| Sbjct 56013 TTAG-TAGACGTGCGCGTCTCCGAGAGTGA--ATCAGCGCCACGGGTTTGTGTCCCGTGA 55957 Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277 |||| || | |||| || || | | ||| |||||||| ||||| ||||||| ||||| Sbjct 55956 CGTGGGCGACCATGCGGGTCAGTATCGCGTAACTGGCGATATTAAACGGTACCCTGAGCC 55897 Query 27278 CCATGTCCCCCGACCTCTGGTA 27299 |||| | | ||||||||||| Sbjct 55896 CCATATAAGCGGACCTCTGGTA 55875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368357697049274