Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3112 104 5e-17 >seq3112 Length=23135 Score = 104 bits (114), Expect = 5e-17 Identities = 182/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 230384 AAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTC 230443 ||||| || | ||||| || | ||| |||| ||| | | || || |||| ||| Sbjct 5555 AAATCGTTGCCGAAGCTGTGCTCATTGAACAGGAATTCCTACGCGATGCCCTTCCTTGTA 5614 Query 230444 GCCTTATTGGCATGAACGCTG-AACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCG 230501 | || ||||| |||||| || || || ||| | |||||||| ||||| || ||||| || Sbjct 5615 GTCTGATTGGAATGAAC--TGCAAGTTGATGTGTCAGTACATTGAATTTGTGGCCGATCG 5672 Query 230502 CATTTTTGTTGCACT-TGGTTACGAGAAAGTGTAC-AACTCTAAGAACCCCTTTGCATTT 230559 | | || | || | || | | |||| | ||||||| ||||||||||| ||| Sbjct 5673 TCTGCTGGTGGAGCTGTCGTGCCCA--AAGTATTGGAACTCTACGAACCCCTTTGACTTT 5730 Query 230560 ATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTAT 230619 |||||| ||||| || ||||||| || ||||| ||||||| ||||| | |||||| Sbjct 5731 ATGGAGAATATTTCACTGGAAGGGAAAACAAACTTTTTCGAAAGACGTGTTGGGGACTAT 5790 Query 230620 CAGAGGCCTGGTGTGATG 230637 || | | |||| || ||| Sbjct 5791 CAAAAGGCTGGCGTTATG 5808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057741663277250