Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3112 156 4e-33 >seq3112 Length=23135 Score = 156 bits (172), Expect = 4e-33 Identities = 350/515 (68%), Gaps = 8/515 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| ||| ||||||||||||| ||||| || || || || ||||||| Sbjct 5794 TTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCT 5735 Query 16734 CCATGAAATCAAAAGGATTAGTAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 |||| || ||||| || || |||| | |||| ||| | | || ||| || | | Sbjct 5734 CCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTT-GGGCACGACAGCTCCACCAGC 5676 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 | | ||| || |||||||| || || || ||||| || | |||||||||||| || ||| Sbjct 5675 AGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGA 5616 Query 16853 CGTAC-CGGAAGAGCTTC-CGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | ||| ||||| || || ||| | ||| || || || | || ||||| || | Sbjct 5615 C-TACAAGGAAGGGCATCGCGT-AGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGA 5558 Query 16911 TACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 | | ||| || ||| ||| | | || | |||||||| | ||||| || | Sbjct 5557 TTTCATGCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAGAGGAGACAGGCAA 5498 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 | ||| ||||| || || || | ||| || || || ||| || | || |||| Sbjct 5497 AGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGCA 5438 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 ||| |||||||| | ||| |||||||| ||||| |||||||| |||||||| |||| Sbjct 5437 AGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCCT 5378 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCAT 17149 | |||| | ||| || | || || |||| | | | || | | ||| |||||| Sbjct 5377 CTACGGCGGAAAAGGCCACTAGCCGCTCGGAAAAGTTTGAGT-TCATATCCGAGATCCAT 5319 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184 || | |||| |||||||| | ||| | ||| || Sbjct 5318 TTGAGGGCCCAATCGGCTTTCTTCTTCACGCACTC 5284 Score = 111 bits (122), Expect = 2e-19 Identities = 213/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 ||| | || || || || || ||||| ||||||||| || || || ||||| || || Sbjct 5172 TCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATATTCTCTATTGCA 5113 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 ||||| || ||| ||| || |||||| | || | || || | |||| | |||| Sbjct 5112 ATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGGCAGAACCTTTCC 5053 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 | ||||||||| ||||| |||||||| || ||||| || |||| | |||| | Sbjct 5052 ACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGCACATGCGAGAGA 4993 Query 17408 AAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACT 17467 || | ||| || | | || | |||| | ||| | ||||| ||||| || || Sbjct 4992 AAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTCGATATGTCAACC 4933 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTAT 17527 ||||| ||||||||| || || ||||||||||| | | ||| | ||| | |||| Sbjct 4932 TCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAGACATCGTCGTAT 4873 Query 17528 TGTATGGGGAATAC 17541 | | |||||| || Sbjct 4872 TTGACGGGGAAGAC 4859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517506298881000