Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3112 154 2e-32 >seq3112 Length=23135 Score = 154 bits (170), Expect = 2e-32 Identities = 291/423 (69%), Gaps = 4/423 (1%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || || | ||| ||| ||||||| ||||| ||||| || || | || ||||| | Sbjct 5794 TTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCT 5735 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 ||||||| |||||||| || |||| | |||| ||| | | || ||| ||| | Sbjct 5734 CCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATA-CTTTGGGCACGACAGCTCCACCAGC 5676 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 | | ||| || |||||||| || || |||||||| || | ||| || ||||| || || Sbjct 5675 AGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGA 5616 Query 16091 CGTACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 | ||| ||||| || | || |||| ||||| || | || ||||| || ||| Sbjct 5615 C-TACAAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGAT 5557 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 || || | | | ||| | | || | ||||||||| | ||||| || || Sbjct 5556 TTCATGCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAGAGGAGACAGGCAAA 5497 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 |||| |||||| ||||| || | ||| || || ||| ||| || | || |||| Sbjct 5496 GTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGCAA 5437 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 ||| |||||||| | |||||||||||| || || ||||| || |||||||| ||||| Sbjct 5436 GAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCCTC 5377 Query 16330 AAC 16332 || Sbjct 5376 TAC 5374 Score = 91.5 bits (100), Expect = 2e-13 Identities = 209/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 16465 ATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGC 16524 |||| | || || || |||||||||| | ||||||||| || || || |||||||| || Sbjct 5173 ATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATATTCTCTATTGC 5114 Query 16525 TATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC 16584 ||||| || |||||| || || || | || | || || | | || | ||| Sbjct 5113 AATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGGCAGAACCTTTC 5054 Query 16585 CGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAAT 16644 | | || || || ||||| ||||| || ||||| || || |||| | ||| | Sbjct 5053 CACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGCACATGCGAGAG 4994 Query 16645 GAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCAC 16704 || | ||| ||| | | || ||||||| || | ||||| ||||| || || Sbjct 4993 AAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTCGATATGTCAAC 4934 Query 16705 TTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764 ||||| |||||||| || || ||||||||||| | || ||| | ||| | ||| Sbjct 4933 CTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAGACATCGTCGTA 4874 Query 16765 TTGTATGGGAAATAC 16779 || | ||| || || Sbjct 4873 TTTGACGGGGAAGAC 4859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511375564469000