Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq976 295 8e-75 seq3112 111 2e-19 >seq976 Length=29826 Score = 295 bits (326), Expect = 8e-75 Identities = 786/1177 (67%), Gaps = 42/1177 (4%) Strand=Plus/Minus Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545 ||||| |||| ||| | ||||| | | ||||| | ||||||| ||||| | Sbjct 23386 GCTTCGGGGCTGTCATAAGGATACCTCATTTTCATAAAGGTATCTGCTAGACCTTGTATG 23327 Query 53546 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 53605 || || || || |||||||| | | |||| |||| || ||||| || | |||||| | Sbjct 23326 CCGATTCCAATTGGTCTATGGCGCATATTGGAGAGTTTAGCTTGAGGCAGTGGATAAAAG 23267 Query 53606 TTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCA-CATCCTTCAGTTT 53664 || ||||| |||| || || || || || || |||||| | | || |||| || || Sbjct 23266 TTGATATCAATAACCTTGTTTAGATTCTTGGTGATGACTTTGGCAATCAACCTT-AGCTT 23208 Query 53665 GAGAAAATC-AAATTGT--CCATCTA---TTACAAACATGTTCAATGCA-ATAGATGCCA 53717 ||| || ||| | | |||||| | ||||| | || | | || || |||| Sbjct 23207 TTCAAAGTCGAAACTCTTGCCATCTGCACTGACAAAGGC-TGGAAGGGAGATTGAGGCCA 23149 Query 53718 GATTACAAACGGCTACCTCATTAGC--ATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775 | || || || || | ||||| || | | | |||| || || || ||||| ||||| Sbjct 23148 GGTTGCAGACTGCAATCTCATCAGGTGAACTG--TATTCTACAATTTCTGTGCACAGATT 23091 Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835 | || ||||| || |||| ||| ||||| |||| ||||| ||||| || || Sbjct 23090 AGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAATTACAGGCATCTTTGTA 23031 Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACG 53895 |||| | |||| |||||||||| || || | || | ||| || | ||| | | || Sbjct 23030 GAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATTGCGTACCACAACTCCCG 22971 Query 53896 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCA-- 53953 |||||| | | | ||| |||||| | ||| ||| | ||| | ||||| Sbjct 22970 AGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTTCATATTGAAGATAGA---GTTCATT 22914 Query 53954 -AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 54012 |||| |||||| || ||| ||| || ||||||| || |||||| | ||| Sbjct 22913 GAACTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATTCATTTGGGTCCATCAATGTCCA 22854 Query 54013 CTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 54068 || ||||||||| || || | ||| || | ||| || |||||||| || ||| | Sbjct 22853 TTCC---TCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCAAAGGGC-ATAGA 22798 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 | || || | | ||| ||| || || ||||| ||| | | |||| || | | Sbjct 22797 AGAGGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTCGACAAAGGAGA 22738 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 ||| || | |||||| ||||| | || |||| | | ||||||| | || || |||| Sbjct 22737 AAATGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCTCTTATTACCTC 22678 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 | || || | || | ||||||||||||| | ||||| | ||| ||||| || ||||| | Sbjct 22677 CTTGGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAATGATGCCATTCG 22618 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAG 54306 || ||||||| || || || || || ||| | | |||||| | | | || || Sbjct 22617 ATTCACCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGAATAGTGTGCACACTG--AG 22560 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 || || || || || |||||||||| | || ||| |||| | || || || ||||| Sbjct 22559 GCCAATACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCTCGTATATGCC 22500 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 || ||||||||||| |||| |||| || || || || |||||||| | | ||| Sbjct 22499 TTCAATACTATCATCATTCATTGTAAGGAGGAAGCAACTGGACATTTGTGGCTGCGGAGT 22440 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA-TTGT 54485 |||| ||||| | ||| ||||| ||||| || ||| | |||||||| | || | |||| Sbjct 22439 GCCCGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTCAGACA-TATACTTGT 22381 Query 54486 ACGTCTCGATAGCTGAGTCTA---TATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 | ||| | |||| || | ||||| | ||| || || | | || | ||||| Sbjct 22380 AGGTCATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCAAGAGAAACTCTCATTA 22324 Query 54543 ACATGTGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 | | ||||||||| || ||| ||| ||||| ||| | || | ||| || ||||| Sbjct 22323 ATAGGTGCTGAGGCCTCTCATACG-TCTTGCCGTTATATCTCTTGAGGTATGACTTTTCT 22265 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | || || || || |||||||||||| |||||||| Sbjct 22264 AGGGTCTTGAATCCGAAATAGTTGTATTCAAAGTCTC 22228 >seq3112 Length=23135 Score = 111 bits (122), Expect = 2e-19 Identities = 205/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 24384 TTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443 ||||| || ||| ||| || || ||||||| ||| ||||||||||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503 || || || || || || || |||||| ||| || |||| ||||| || ||| Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 24504 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 24563 || || | ||| | | |||||| || |||||||| || || || || || |||| Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 24564 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 24623 ||||| | ||| | ||| || | | || | | ||||| |||| ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683 ||||| || || ||||| || |||||||| || || | ||||||||||| | | |||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 24684 A 24684 | Sbjct 4884 A 4884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593676514266000