Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3112 145 8e-30 seq1961 100 3e-16 >seq3112 Length=23135 Score = 145 bits (160), Expect = 8e-30 Identities = 303/449 (67%), Gaps = 2/449 (0%) Strand=Plus/Plus Query 116971 GTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTT 117030 |||||| || |||| ||||| ||||| || |||||| | | | | | ||| Sbjct 5286 GTGCGTGAAGAAGAAAGCCGATTGGGCCCTCAAATGGATCTCGGATATGAACTCAAACTT 5345 Query 117031 CGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGC 117090 |||||| || |||||||| | ||||| |||||| | ||||| || || ||||| Sbjct 5346 TTCCGAGCGGCTAGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGC 5405 Query 117091 CGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCT 117150 || ||||| ||| | |||||||| || ||| |||| || || || || ||||| ||||| Sbjct 5406 AGCGATATTCTGGATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCT 5465 Query 117151 CATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGT 117210 |||||| | || || || || ||| ||||||||||||| | || || || || || Sbjct 5466 CATCTCTCGCGATGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAACACATGAA 5525 Query 117211 GCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCA 117270 | | ||| | || ||| || || ||||| |||| || || ||| || || Sbjct 5526 GAACAAACCTACCGTGGCCAAAGTGCATGAAATCGTTGCCGAAGCTGTGCTCATTGAACA 5585 Query 117271 GCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTC 117330 | ||||| ||| || || || ||||| | ||| | || ||| | ||||| Sbjct 5586 GGAATTCCTACGCGATGCCCTTCCTTGTAGTCTGATTGGAATGAACTGCAAGTTGATGTG 5645 Query 117331 GCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCG-GCGCCAAGCACT 117389 || ||||| || || || ||||| | |||||| | ||||| |||| || | ||| | | Sbjct 5646 TCAGTACATTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCT-GTCGTGCCCAAAGTATT 5704 Query 117390 ACAACACGCCCAACCCGCTGGACTTTATG 117418 ||| | | ||||| | ||||||||| Sbjct 5705 GGAACTCTACGAACCCCTTTGACTTTATG 5733 Score = 118 bits (130), Expect = 1e-21 Identities = 210/304 (69%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 |||||| | ||||| || | |||| | || |||||||| | || || || ||| Sbjct 4862 TTCCCCGTCAAATACGACGATGTCTGGCAATTTTATAAAAAGGCTGTCGCCTCTTTTTGG 4921 Query 116675 ACCGTCGAGGAGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAA 116733 || || || ||||| ||| | || || ||| | ||| | ||| || | | || || | Sbjct 4922 ACTGTTGAAGAGGTTGACATATCGAAAGACCTCAAGC-ATTGGCAGGACCTCAAAGATGA 4980 Query 116734 CGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAA 116793 || ||||| || || ||| ||||||||||| ||||| || |||||||| |||||| Sbjct 4981 AGAACGCCACTTTCTCTCGCATGTGCTGGCCTTCTTCGCTGCTAGCGACGGAATCGTCCT 5040 Query 116794 CGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTA 116853 ||| ||||| || || | ||| || ||||| || | |||| || | |||||| Sbjct 5041 CGAAAATCTCGTGGAAAGGTTCTGCCAAGAGGTCAAGATTCCCGAAGCCAGAGCCTTCTA 5100 Query 116854 CGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACAC 116913 | ||| ||||| || || ||||| | || ||||||||||| || || || ||||| Sbjct 5101 CTCCTTCCAGATTGCAATAGAGAATATTCATTCGGAAATGTACTCTCTACTGATTGACAC 5160 Query 116914 GTAC 116917 ||| Sbjct 5161 CTAC 5164 >seq1961 Length=16662 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || || || ||||| || | || ||||| | | | Sbjct 7932 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCGAGCCAAGC 7873 Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||| | || | |||| |||| || |||| ||||| ||||| |||||| | || Sbjct 7872 GACTCGATCGAG--AACG-TCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAGAT 7816 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || |||| || || || || |||| |||| | || || ||||||| Sbjct 7815 CAGCAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACTAC 7756 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| |||||| |||| || ||| Sbjct 7755 AACATCCAAAAGGAGTCCACTCTTCAT 7729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515180075542000