Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5171 129 5e-25 seq3112 102 7e-17 seq1961 102 7e-17 >seq5171 Length=25613 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||| |||||||| | ||| | ||| || || |||||||| Sbjct 8049 GTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCAAGTTGTTTTCCG 8108 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||||| ||||| || || ||||| ||| ||| || ||| Sbjct 8109 GCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTGGCTTTG 8168 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | | ||| ||||||| ||| | ||||| || || |||||| Sbjct 8169 ACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGTAAGAGTT 8228 Query 118722 TTTACAAAAATCTGCATGG 118740 || |||||||||||||||| Sbjct 8229 TTGACAAAAATCTGCATGG 8247 >seq3112 Length=23135 Score = 102 bits (112), Expect = 7e-17 Identities = 274/411 (67%), Gaps = 11/411 (3%) Strand=Plus/Plus Query 44891 TTCTTTTCGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGGAGTGATGCCCGGA 44950 ||||| || ||| || || |||||||| | ||||| | ||| | |||| || Sbjct 5386 TTCTTCTCTGGGTCCTTCGCAGCGATATTCTGGATGAAGAAACGTGGACTCTTGCCGGGT 5445 Query 44951 CTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGC 45010 || || |||||||| || | || || | || ||||| || || ||| |||||||||| Sbjct 5446 CTCACCTTTAGCAATGAGCTCATCTCTCGCGATGAAGGCCTACATACCGACTTTGCCTGT 5505 Query 45011 CTCTACTATAATACGAGAGTCGATCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTC 45070 ||| || ||| || | || |||| | || | ||| || | || || | Sbjct 5506 CTCCTCTTTAA-ACACATGAAGAACAAACCTAC--CGTGGCCAAAGTGCATGAAATCGTT 5562 Query 45071 TCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT-TGGT 45129 ||||||| ||| ||| || |||||| | || || || || | || || | Sbjct 5563 GCCGAAGCTGTGCTCATTGAACAGGAATTCCTACGCGATGCCCTTCCTTG-TAGTCTGAT 5621 Query 45130 GGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGT 45189 ||||||||| || ||||| | |||||||||| ||||| ||||||||||| || || Sbjct 5622 TGGAATGAACTGCAAGTTGATGTGTCAGTACATTGAATTTGTGGCCGATCGTCTGCTGGT 5681 Query 45190 CCAGTTAAAGTATCCCAAG-AT--GTACTATACTGAGAACCCATTCGAGTTTATGAACAA 45246 || | || || ||| || | ||| ||| |||||| || || |||||| | || Sbjct 5682 GGAGCTGTCGTGCCCAAAGTATTGGAACTCTAC---GAACCCCTTTGACTTTATGGAGAA 5738 Query 45247 TATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 |||||| |||| || ||||| || ||||| || | ||| || || || || Sbjct 5739 TATTTCACTGGAAGGGAAAACAAACTTTTTCGAAAGACGTGTTGGGGACTA 5789 >seq1961 Length=16662 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| ||||| |||||||| ||| | ||| | || || Sbjct 7724 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTTCCGTCTTCC 7783 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || ||||| |||| ||||| |||||||| || || || |||||||||||| | Sbjct 7784 AATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCCTTGTCTTGA 7843 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| | ||| | ||||||||| | || | || || Sbjct 7844 ATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGTTATGGTCTTA 7903 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| |||||||| Sbjct 7904 CCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433798279603900