Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1961 87.8 1e-12 >seq1961 Length=16662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | || || || |||| || | ||| || || || |||||||||||||| Sbjct 7706 CCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 7765 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | |||| ||||| ||||| || || || || || || ||||| || ||| Sbjct 7766 AGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 7825 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTCGA 34340 | | ||||||||| ||||| | ||| || || ||||| ||| | | |||| Sbjct 7826 ATACCCTCCTTGTCTTGAATCTT--GGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGA 7883 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || ||||| || || || |||||||| |||||||||||||| Sbjct 7884 CCTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323048080052000