Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3112 120 3e-22 >seq3112 Length=23135 Score = 120 bits (132), Expect = 3e-22 Identities = 213/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 |||||||| ||| ||| || || || || |||| | |||||||| ||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAG 16606 ||||| ||||| ||||| || || ||| ||| ||||||| || | || || | Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGT 16666 | |||||||| | | |||||| || ||||| |||||||| || || || || || Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 16667 ATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTT 16726 | || | ||| | ||| | |||| || | ||| | | ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 16727 GATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCAT 16786 |||| || |||||||| |||||||||||||| || |||||||||||||| | || ||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 16787 ATGTCTTCGTA 16797 | || ||||| Sbjct 4884 ACATCGTCGTA 4874 Score = 116 bits (128), Expect = 3e-21 Identities = 299/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || | ||| | |||| || || |||||||| ||||| | ||||||||| Sbjct 5795 TTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTC 5736 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 |||||||| ||||| || || | || | || || ||| || |||| || Sbjct 5735 TCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGACAGCTCCACCAGC 5676 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 | | ||| ||||||||||| || ||||| ||| || | ||||||||||| || | Sbjct 5675 AGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGA 5616 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTT---CAATGATT 16180 || ||| | || || || || | | ||| || || |||| ||| ||| Sbjct 5615 CTACAAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGAT- 5557 Query 16181 ATATCTCTTACTACACTAT-TTAACGGAGGGTTTAAT----AAGTGTTTAAACATTATAC 16235 || | |||| | |||| ||||| | | ||||||||| | | || Sbjct 5556 -------TTCATGCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAGAGGAGAC 5504 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 | ||||| || ||| | ||||| || | | || | ||| || ||| || |||| Sbjct 5503 AGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGAC 5444 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | |||| ||||| ||||| || ||||| ||||| || || || || ||||| ||||||| Sbjct 5443 CCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATA 5384 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTC 16389 | || || || |||| ||| || || | ||||| Sbjct 5383 TGCCCTCTACGGCGGAAAAGGCCACTAGCCGCTC 5350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462476877995000