Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3112 109 5e-19 >seq3112 Length=23135 Score = 109 bits (120), Expect = 5e-19 Identities = 340/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 |||||||| |||||||| || | ||| | | |||| || ||||| ||||| |||||| Sbjct 5807 ATAACGCCAGCCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCC 5748 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACAT-AAACACTTT-ATCACAAC 14018 ||||| ||||| |||||||| ||||| || || || || | || ||||| ||| || Sbjct 5747 AGTGAAATATTCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGAC 5688 Query 14019 CTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAAT 14078 || || | || | | ||| || | || ||||| || ||| |||| || | || | Sbjct 5687 --AGCTCCACCAGCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGT 5630 Query 14079 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 14138 |||| || || || | ||||| || | || ||||| | ||| || ||||| Sbjct 5629 TCATTCCAATCAGACTACAAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAG 5570 Query 14139 CCTCGTTTATAATAATCGTAATAATTT--CATTAGAAGGAGGATATTTTAGATGTTTAAA 14196 | ||| | || || | | ||| | | ||| | || | |||||||| Sbjct 5569 CTTCGGCAACGAT-TTCAT-GCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAA 5512 Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256 | | ||| ||||| || ||| ||||| ||||| | | || || || || ||| Sbjct 5511 GAGGAGACAGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAA 5452 Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316 || | || |||| | ||| ||||| || | ||| ||||| || ||||| || || || Sbjct 5451 GGTGAGACCCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGA 5392 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 |||||||| ||||| || || | ||| || | || || || ||| || || | Sbjct 5391 GAAGAATATGCCCTCTACGGCGGAAAAGGCCACTAGCCGCTCGGAAAAGTTTGAGTTCAT 5332 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAttttttttt 14415 | ||| |||||||| ||||| || | ||| || || Sbjct 5331 ATCCGAGATCCATTTGAGGGCCCAATCGGCTTTCTTCTT 5293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482308971881000