Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1961 95.1 9e-15 seq5171 84.2 2e-11 >seq1961 Length=16662 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||||||| |||| ||||| || || || ||||| ||||||||||||| | ||| | Sbjct 7715 AGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTT 7774 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||||||||| || || ||| ||||||| | ||| ||||| ||| | || ||| Sbjct 7775 CCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCC 7834 Query 18228 TTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || ||| ||| | ||||| | | | | ||| | |||||| || | || Sbjct 7835 TTGTCTTGAATCTTGGT-TTTGACGTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGT 7893 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || || | ||||||||||| || ||||| Sbjct 7894 TATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 >seq5171 Length=25613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | ||||| ||||| || |||||||| ||||| || | | ||| | Sbjct 8028 AGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTG 8087 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | |||||| || || |||| | || || ||||| || | |||||| Sbjct 8088 CCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCC 8147 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||| | | || ||||| | | | |||||| |||||| || | ||| Sbjct 8148 TTATCTTGAATCT-TGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGT 8206 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || |||| || || | ||||| |||||||| ||||| |||| Sbjct 8207 AATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCATGGTTAA 8251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379315913725875