Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3112 127 2e-24 seq976 118 9e-22 >seq3112 Length=23135 Score = 127 bits (140), Expect = 2e-24 Identities = 312/467 (67%), Gaps = 12/467 (3%) Strand=Plus/Plus Query 57967 CCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGG 58026 ||||| ||||| | || || ||||||| || || |||||||| || || ||| || | Sbjct 5348 CCGAGCGGCTAGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAG 5407 Query 58027 CAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGA 58086 | ||||| |||||||||||||| || || |||| || || || |||||||| ||| | | Sbjct 5408 CGATATTCTGGATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCA 5467 Query 58087 TATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCA 58146 | || ||||| || || || ||||| || ||||| || || | | ||||| | Sbjct 5468 TCTCTCGCGATGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAACACATGAAGA 5527 Query 58147 ATAAACCGAC----GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA 58202 | ||||| || || | |||| || || | |||| || || || ||| Sbjct 5528 ACAAACCTACCGTGGCCAAAGTGCAT----GAAATCGTTGCCGAAGCTGTGCTCATTGAA 5583 Query 58203 AATGAGTTTGTCACCGAAGCCCTACC-GGTGGCCATGCTCGGTATGAACAATGATTTGAT 58261 | || || | ||| ||||| || || | | || | || |||||| | ||||| Sbjct 5584 CAGGAATTCCTACGCGATGCCCTTCCTTGTAGTC-TGATTGGAATGAACTGCAAGTTGAT 5642 Query 58262 GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTG-ATTGGAGAGCGTC 58320 || |||||||||| ||||| ||||| | || || | || ||| || | || Sbjct 5643 GTGTCAGTACATTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCTGTCGTGCCCAAAGT- 5701 Query 58321 ATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAA 58380 ||| ||| | | || || ||||| |||||| | || || || || || || |||| Sbjct 5702 ATTGGAACTCTACGAACCCCTTTGACTTTATGGAGAATATTTCACTGGAAGGGAAAACAA 5761 Query 58381 ACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 |||||||||||| | ||| | || |||||||| ||||| ||| Sbjct 5762 ACTTTTTCGAAAGACGTGTTGGGGACTATCAAAAGGCTGGCGTTATG 5808 >seq976 Length=29826 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || | ||| |||||||| || || ||||| || || || || | ||| || ||| Sbjct 22829 CATGAATAAATCTGGTATCCAAAGGGCATAGAAGAGGTCACGAGCTCTCACTTCTTCTGC 22770 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 || || || ||| ||| || | |||| || | ||||| |||||| || ||||| || Sbjct 22769 ACCAGTATTTTTTCTCATCTCGACAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATA 22710 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 || |||||| || || ||||||||||| || || || || || ||||| || ||||| || Sbjct 22709 AATGGCAAAAGCTCCAGGTCTCTTATTACCTCCTTGGTCAACATAACGAGCGGTGTTATT 22650 Query 23533 GTACACTCTTAGCATCGG 23550 | ||||| ||||| || Sbjct 22649 AAAGACTCTGAGCATGGG 22632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445732549614000