Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3112 141 2e-28 >seq3112 Length=23135 Score = 141 bits (156), Expect = 2e-28 Identities = 285/420 (68%), Gaps = 7/420 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||| | || || || || || ||||| ||| | |||||| | || |||||| Sbjct 5359 GTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAGCGATATTCTGG 5418 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 || ||||| | || | ||||| |||||||||| ||||||| |||| ||| | || Sbjct 5419 ATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCATCTCTCGCGAT 5478 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGAT--ACCC 102095 ||||| || ||| ||||||||| || | || || ||| | || || | || Sbjct 5479 GAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAACACA----TGAAGAACAAACC 5534 Query 102096 CATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 | | | || | | | |||||| || | ||||| || | |||||||| ||||| | Sbjct 5535 TACCGTGGCCAAAG-TGCATGAAATCGTTGCCGAAGCTGTGCTCATTGAACAGGAATTCC 5593 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | | | |||| ||| || | | ||||||||||||||||||||| | ||||||| Sbjct 5594 TACGCGATGCCCTTCCTTGTAGTCTGATTGGAATGAACTGCAAGTTGATGTGTCAGTACA 5653 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 ||||||||||||| ||| || |||| || || |||| | | || || Sbjct 5654 TTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCTGTCGTGCCCAAAGTATTGGAACTCTA 5713 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 | |||||||| || ||||| |||||||| || || || || |||||||| |||| Sbjct 5714 CGAACCCCTTTGACTTTATGGAGAATATTTCACTGGAAGGGAAAACAAACTTTTTCGAAA 5773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989506974801625