Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq976 291 1e-73 seq3112 109 7e-19 >seq976 Length=29826 Score = 291 bits (322), Expect = 1e-73 Identities = 798/1201 (66%), Gaps = 36/1201 (3%) Strand=Plus/Minus Query 62697 TCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 |||||||| |||||| | | || | ||||| ||||| ||| | ||||| | | Sbjct 23413 TCAAAGATGAGCTTATTCA-ACCTGCTAGCTTCGGGGCTGTCATAAGGATACCTCATTTT 23355 Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 ||||| | || |||| ||||| | || || || || |||||||| | | |||| || Sbjct 23354 CATAAAGGTATCTGCTAGACCTTGTATGCCGATTCCAATTGGTCTATGGCGCATATTGGA 23295 Query 62816 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62875 || || ||||| || | |||||| | || ||||| |||| || || ||||| || Sbjct 23294 GAGTTTAGCTTGAGGCAGTGGATAAAAGTTGATATCAATAACCTTGTTTAGATTCTTGGT 23235 Query 62876 AATTACTTTGACCA-CATCCTTCAGTTTGAGAAAATCAAATCGC---CCATCTA---TTA 62928 || |||||| | | || |||| || || ||| || || | | |||||| | | Sbjct 23234 GATGACTTTGGCAATCAACCTT-AGCTTTTCAAAGTCGAAACTCTTGCCATCTGCACTGA 23176 Query 62929 CAAACATGTTCAATGCA-ACAGATGCCAGATTACACACGGCTACCTCATTAGC--ATCCG 62985 |||| | || | | | || ||||| || || || || | ||||| || | | | Sbjct 23175 CAAAGGC-TGGAAGGGAGATTGAGGCCAGGTTGCAGACTGCAATCTCATCAGGTGAACTG 23117 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 |||| || || || ||||| |||||| || || || || |||| ||| |||| Sbjct 23116 --TATTCTACAATTTCTGTGCACAGATTAGAACTACGAATGGTCCCCAAATGTTGCTGAT 23059 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | |||| ||||| ||||| || || |||| | ||||| |||||||||| || || | Sbjct 23058 TCGACTTTGAATTACAGGCATCTTTGTAGAGAACGTATGGATTACCAGTTTCGATTTGTG 22999 Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC 63165 || | ||| || | ||| | | |||||||| | | | ||| || ||| | Sbjct 22998 CATCAACAATTGCGTACCACAACTCCCGAGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTT 22939 Query 63166 TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGAC 63225 ||| ||| || ||| | | | ||||| |||||| || ||| || || | Sbjct 22938 CTTCATATTGAAGATAGAGTTCATTGAACTTTGGTCCCCAGCAATCTGCCAGTCCCGGGC 22879 Query 63226 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGA 63282 |||||| || |||||| | ||| || ||||||||| || || | ||| || | Sbjct 22878 ATTCATTTGGGTCCATCAATGTCCATTCC---TCATCCTTCTCGACACGCTCCATGAATA 22822 Query 63283 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||| || |||||||| || ||| || || || | | ||| ||| || || ||| Sbjct 22821 AATCTGGTATCCAAAGGGC-ATAGAAGAGGTCACGAGCTCTCACTTCTTCTGCACCAGTA 22763 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 || ||| | | |||| || | | ||| || | |||||| ||||| | || ||||| Sbjct 22762 TTTTTTCTCATCTCGACAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATAAATGGCA 22703 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | ||||||| | || || ||||| || || | || | ||||||||||||| | ||| Sbjct 22702 AAAGCTCCAGGTCTCTTATTACCTCCTTGGTCAACATAACGAGCGGTGTTATTAAAGACT 22643 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 || | ||| ||||| || || || ||| |||||| || || || || || | ||| | Sbjct 22642 CTGAGCATGGGAATGATGCCATTCGATTCACCATTCGTTCCTGAAATGTATGCGCCAGAG 22583 Query 63522 GCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 | |||||| | | | || || || || || || || |||||||||| | || | Sbjct 22582 CCGCGAATAGTGTGCACACTG--AGGCCAATACCACCAGCATTTTTAGAGATAAGGGCAC 22525 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 || |||| | || || || |||||||| || |||||||| |||| |||| || || | Sbjct 22524 ATTGTTTGAGAGTCTCGTATATGCCTTCAATACTATCATCATTCATTGTAAGGAGGAAGC 22465 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | || |||||||| | | | ||| |||| ||||| | ||| ||||| ||||| || | Sbjct 22464 AACTGGACATTTGTGGCTGCGGAGTGCCCGAGTTAAAGAGGGTGGGAGACGCGTGAGTGA 22405 Query 63700 ACCATTTTTCAGAAAGTAGA-TTGTACGTCTCAATAGCTGAGTCTA---TATCCCATTGA 63755 || | |||||||| | || | ||||| ||| | |||| || | ||||| | | Sbjct 22404 ACAACTTTTCAGACA-TATACTTGTAGGTCATTAAAGCTTCCTCAACATTATCCAA---A 22349 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || || || | | || | |||||| | ||||||||| || ||| | ||| ||| Sbjct 22348 TGGATGCCAAGAGAAACTCTCATTAATAGGTGCTGAGGCCTCTCATACGTCTTGCCGTTA 22289 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 | || | ||| || ||||| | || || || || |||||||||||| ||||||| Sbjct 22288 TATCTCTTGAGGTATGACTTTTCTAGGGTCTTGAATCCGAAATAGTTGTATTCAAAGTCT 22229 Query 63876 C 63876 | Sbjct 22228 C 22228 >seq3112 Length=23135 Score = 109 bits (120), Expect = 7e-19 Identities = 218/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 33831 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 ||||| || ||| ||| || || || |||| ||| ||||||||||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 || || || || ||||| || |||||| ||| || |||| ||||| || ||| Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010 || || | ||| | | |||||| || ||||| || || || || || || |||| Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 34011 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 34070 ||||| | ||| | ||| || | | || | | ||||| |||| ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 34130 ||||| || || ||||| || |||||||| || || | ||||||||||| | | |||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 34131 ATGTCATGATATTGGATTGGGAA 34153 | || | |||| || ||||| Sbjct 4884 ACATCGTCGTATTTGACGGGGAA 4862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629769773226000