Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq976 288 1e-72 seq3112 105 9e-18 >seq976 Length=29826 Score = 288 bits (318), Expect = 1e-72 Identities = 781/1174 (67%), Gaps = 36/1174 (3%) Strand=Plus/Minus Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576 ||||| |||| ||| | ||||| | | ||||| | ||||||| ||||| | Sbjct 23386 GCTTCGGGGCTGTCATAAGGATACCTCATTTTCATAAAGGTATCTGCTAGACCTTGTATG 23327 Query 65577 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 65636 || || || || |||||||| | | |||| |||| || ||||| || | |||||| | Sbjct 23326 CCGATTCCAATTGGTCTATGGCGCATATTGGAGAGTTTAGCTTGAGGCAGTGGATAAAAG 23267 Query 65637 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA-CATCCTTCAGTTT 65695 || ||||| |||| || || ||||| || || |||||| | | || |||| || || Sbjct 23266 TTGATATCAATAACCTTGTTTAGATTCTTGGTGATGACTTTGGCAATCAACCTT-AGCTT 23208 Query 65696 GAGAAAATCAAATCGCT---CATCTA---TTACAAACATGTTCAATGCA-ACAGATGCCA 65748 ||| || || | || ||||| | ||||| | || | | | || |||| Sbjct 23207 TTCAAAGTCGAAACTCTTGCCATCTGCACTGACAAAGGC-TGGAAGGGAGATTGAGGCCA 23149 Query 65749 GATTACAAACGGCTACCTCATTAGC--ATCCGCATATTGTATTATCTCAGTGCAAAGATT 65806 | || || || || | ||||| || | | | |||| || || || ||||| ||||| Sbjct 23148 GGTTGCAGACTGCAATCTCATCAGGTGAACTG--TATTCTACAATTTCTGTGCACAGATT 23091 Query 65807 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 65866 | || ||||| || |||| ||| ||||| |||| ||||| ||||| || || Sbjct 23090 AGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAATTACAGGCATCTTTGTA 23031 Query 65867 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 65926 |||| | ||||| |||||||||| || || | || | ||| || | ||| | | || Sbjct 23030 GAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATTGCGTACCACAACTCCCG 22971 Query 65927 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 65986 |||||| | | | ||| |||||| | ||| ||| | ||| | | | ||| Sbjct 22970 AGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTTCATATTGAAGATAGAGTTCATTGAA 22911 Query 65987 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 66046 || |||||| || ||| ||| || ||||||| || |||||| | ||| || Sbjct 22910 CTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATTCATTTGGGTCCATCAATGTCCATTC 22851 Query 66047 TCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 66102 ||||||||| || || | ||| || | ||| || |||||||| || ||| || | Sbjct 22850 C---TCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCAAAGGGC-ATAGAAGA 22795 Query 66103 AATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 66162 || | | ||| ||| || || ||||| ||| | | |||| || | | || Sbjct 22794 GGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTCGACAAAGGAGAAAA 22735 Query 66163 TATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 66222 | || |||||| ||||| | || ||||| | | ||||||| | || || ||||| | Sbjct 22734 TGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCTCTTATTACCTCCTT 22675 Query 66223 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 66282 | || | || | ||||||||||||| | ||||| | ||| ||||| || ||||| ||| Sbjct 22674 GGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAATGATGCCATTCGATT 22615 Query 66283 TACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA--CTAATTGATAGACC 66340 |||||| || || || || || ||| | |||||| | | | ||| | || Sbjct 22614 CACCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGAATAGTGTGCACACTGA--GGCC 22557 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || || |||||||||| | || ||| |||| | || || || ||||| || Sbjct 22556 AATACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCTCGTATATGCCTTC 22497 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 ||||||||||| |||| |||| || || || || |||||||| | | ||| || Sbjct 22496 AATACTATCATCATTCATTGTAAGGAGGAAGCAACTGGACATTTGTGGCTGCGGAGTGCC 22437 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA-TTGTACG 66519 || ||||| | ||| ||||| ||||| || ||| | |||||||| | || | ||||| | Sbjct 22436 CGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTCAGACA-TATACTTGTAGG 22378 Query 66520 TCTCAATAGCTGAGTCTA---TATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 || | |||| || | ||||| | ||| || || | | || | |||||| | Sbjct 22377 TCATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCAAGAGAAACTCTCATTAATA 22321 Query 66577 TGTGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||||||| || ||| ||| ||||| ||| | || | ||| || ||||| | Sbjct 22320 GGTGCTGAGGCCTCTCATACG-TCTTGCCGTTATATCTCTTGAGGTATGACTTTTCTAGG 22262 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 || || || || |||||||||||| |||||||| Sbjct 22261 GTCTTGAATCCGAAATAGTTGTATTCAAAGTCTC 22228 >seq3112 Length=23135 Score = 105 bits (116), Expect = 9e-18 Identities = 204/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 36407 TTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 ||||| || ||| ||| || || ||||||| ||| ||||||||||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 || || || || || || || |||||| ||| || |||| ||||| || ||| Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586 || || | ||| | | |||||| || |||||||| || || || || || |||| Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646 ||||| | ||| | ||| | | | || | | ||||| |||| ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 36706 ||||| || || ||||| || |||||||| || || | ||||||||||| | | |||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 36707 A 36707 | Sbjct 4884 A 4884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658122820003000