Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq976 309 4e-79 seq3112 114 2e-20 >seq976 Length=29826 Score = 309 bits (342), Expect = 4e-79 Identities = 787/1175 (67%), Gaps = 38/1175 (3%) Strand=Plus/Minus Query 79396 GCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 79455 ||||| |||| ||| | ||||| | | ||||| | ||||||| ||||| | Sbjct 23386 GCTTCGGGGCTGTCATAAGGATACCTCATTTTCATAAAGGTATCTGCTAGACCTTGTATG 23327 Query 79456 CCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAA 79515 || || || || |||||||| | | |||| || | || ||||| || | |||||| | Sbjct 23326 CCGATTCCAATTGGTCTATGGCGCATATTGGAGAGTTTAGCTTGAGGCAGTGGATAAAAG 23267 Query 79516 TTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCA-CATCCTTTAGTTT 79574 || ||||| |||| || || |||||| || || |||||| | | || |||| || || Sbjct 23266 TTGATATCAATAACCTTGTTTAGATTCTTGGTGATGACTTTGGCAATCAACCTT-AGCTT 23208 Query 79575 GAGAAAATCAAA--TCGT-CCATCTA---TTACAAACATGTTCAACGCGACA--GATGCC 79626 ||| || || || | |||||| | ||||| | | | | || | || ||| Sbjct 23207 TTCAAAGTCGAAACTCTTGCCATCTGCACTGACAAAG--GCTGGAAGGGAGATTGAGGCC 23150 Query 79627 AGATTACAAACGGCTACCTCATTAGC--ATCCGCATATTGTATTATTTCAGTGCAGAGGT 79684 || || || || || | ||||| || | | | |||| || ||||| ||||| || | Sbjct 23149 AGGTTGCAGACTGCAATCTCATCAGGTGAACTG--TATTCTACAATTTCTGTGCACAGAT 23092 Query 79685 TACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 79744 || || |||||| || |||| ||| ||||| |||| ||||| ||||| || | Sbjct 23091 TAGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAATTACAGGCATCTTTGT 23032 Query 79745 AAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 79804 | |||| | | ||| |||||||||| || || | || | ||| || | ||| | | | Sbjct 23031 AGAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATTGCGTACCACAACTCCC 22972 Query 79805 GAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGA 79864 ||||||| | | | |||| |||||| | ||| ||||| ||| | | | || Sbjct 22971 GAGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTTCATATTGAAGATAGAGTTCATTGA 22912 Query 79865 ACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACT 79924 ||| |||||| ||| | | ||| || ||||| | || |||||| | ||| | Sbjct 22911 ACTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATTCATTTGGGTCCATCAATGTCCATT 22852 Query 79925 CTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 79983 | |||| | || || || | ||| || | ||| || |||||||| || ||| || || Sbjct 22851 CCTCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCAAAGGGC-ATAGAAGAGG 22793 Query 79984 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 80043 || | | ||| || || || ||||| ||| | | |||| || | | ||| Sbjct 22792 TCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTCGACAAAGGAGAAAATG 22733 Query 80044 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103 || | |||||| ||||| | || ||||| | | |||| |||| || || ||||| || Sbjct 22732 TCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCTCTTATTACCTCCTTGG 22673 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | || | ||||||||||||| | ||||| | ||| ||||| || ||||| ||| | Sbjct 22672 TCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAATGATGCCATTCGATTCA 22613 Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTA 80221 ||||| || || || || || ||| | | |||||| | | | || || || | Sbjct 22612 CCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGAATAGTGTGCACACTG--AGGCCAA 22555 Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 80281 | || || || |||||||||| | || ||| |||| | || || || ||||| || | Sbjct 22554 TACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCTCGTATATGCCTTCAA 22495 Query 80282 TGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 80341 | ||||||||| |||| |||| || || || || |||||||| | | ||| |||| Sbjct 22494 TACTATCATCATTCATTGTAAGGAGGAAGCAACTGGACATTTGTGGCTGCGGAGTGCCCG 22435 Query 80342 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA-TTGTACGTC 80400 ||||| | ||| ||||| ||||| || ||| | |||||||||| || | ||||| ||| Sbjct 22434 AGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTCAGACA-TATACTTGTAGGTC 22376 Query 80401 TCAATAGCTGATTCTA---TATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 | |||| || | ||||| | ||| || || | | || | |||||| | | Sbjct 22375 ATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCAAGAGAAACTCTCATTAATAGG 22319 Query 80458 TGCTGAGGTCTTTCA-ACGATCTT---GTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||| || ||| ||| |||| ||||| | | || | ||| || ||||| | Sbjct 22318 TGCTGAGGCCTCTCATACG-TCTTGCCGTTATATCTCTT---GAGGTATGACTTTTCTAG 22263 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 || || || || |||||||||||| |||||||| Sbjct 22262 GGTCTTGAATCCGAAATAGTTGTATTCAAAGTCTC 22228 >seq3112 Length=23135 Score = 114 bits (126), Expect = 2e-20 Identities = 219/323 (68%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 50209 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 ||||| || ||| ||| || || || |||| ||| ||||||||||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 || || || || ||||| || |||||| ||| || |||| ||||| || ||| Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 || || | ||| | | |||||| || |||||||| || || || || || |||| Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 ||||| | ||| || ||| | | | || | | ||||| |||| ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 50508 ||||| || || ||||| || |||||||| || || | ||||||||||| | | |||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 50509 ATGTCATGATATTGGATTGGGAA 50531 | || | |||| || ||||| Sbjct 4884 ACATCGTCGTATTTGACGGGGAA 4862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718214256463000