Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3112 105 6e-18 >seq3112 Length=23135 Score = 105 bits (116), Expect = 6e-18 Identities = 343/523 (66%), Gaps = 16/523 (3%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 |||||||| |||||||| || | ||| | | |||| || ||||| ||||| |||||| Sbjct 5807 ATAACGCCAGCCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCC 5748 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACAT-AAACACTTT-ATCACAAC 13686 ||||| ||||| |||||||| ||||| || || | || | || ||||| ||| || Sbjct 5747 AGTGAAATATTCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGAC 5688 Query 13687 CTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13746 || || | || | | ||| || | ||| ||||| || ||| |||| || | || | Sbjct 5687 --AGCTCCACCAGCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGT 5630 Query 13747 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 13806 |||| || || || | ||||| || | || ||||| | ||| || ||||| Sbjct 5629 TCATTCCAATCAGACTACAAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAG 5570 Query 13807 CCTCTTTTATAATAATTGTAATAATCTCATTAG--AAGG-AGG---ATATTTTAGATGTT 13860 ||| || ||| | || | | || | | || ||| | || | |||| Sbjct 5569 ---CTTCGGCAACGATT-TCAT--GCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTT 5516 Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 |||| | | ||| ||||| || ||| ||||| ||||| | | || || || || Sbjct 5515 TAAAGAGGAGACAGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGC 5456 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 ||| || | || |||| | ||| ||||| || | ||| ||||| || || || |||| Sbjct 5455 TAAAGGTGAGACCCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACC 5396 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | || |||||||| ||||| || || | ||| || | || || || ||| || | Sbjct 5395 CAGAGAAGAATATGCCCTCTACGGCGGAAAAGGCCACTAGCCGCTCGGAAAAGTTTGAGT 5336 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttttt 14083 | | | ||| |||||||| ||||| || | ||| || || Sbjct 5335 TCATATCCGAGATCCATTTGAGGGCCCAATCGGCTTTCTTCTT 5293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479691570655000