Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3112 107 2e-18 >seq3112 Length=23135 Score = 107 bits (118), Expect = 2e-18 Identities = 302/460 (66%), Gaps = 4/460 (1%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 |||||||| |||||||| || | ||| | | |||| |||||||| ||||| |||||| Sbjct 5807 ATAACGCCAGCCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCC 5748 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACAT-AAACACTTT-ATCACAAC 13474 ||||| ||||| |||||||| || || || || || || | || ||||| ||| || Sbjct 5747 AGTGAAATATTCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGAC 5688 Query 13475 CTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13534 || || | | | | ||| || | ||| ||||| || ||| |||| || | || | Sbjct 5687 --AGCTCCACCAGCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGT 5630 Query 13535 TCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAG 13594 |||| || || || | ||||| || || ||||| | ||| || ||||| Sbjct 5629 TCATTCCAATCAGACTACAAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAG 5570 Query 13595 CCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA 13654 | ||| | || | | || | | ||| | || | |||||||| | Sbjct 5569 CTTCGGCAACGATTTCATGCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAGA 5510 Query 13655 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13714 | ||| ||||| || ||| ||||| ||||| | | || || || || ||| | Sbjct 5509 GGAGACAGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGG 5450 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 13774 | | || |||| | ||| ||||| || | ||| ||||| || ||||| || || || | Sbjct 5449 TGAGACCCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGA 5390 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 ||||||| ||||| || || | ||| || | ||| || || Sbjct 5389 AGAATATGCCCTCTACGGCGGAAAAGGCCACTAGCCGCTC 5350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478552457163000