Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq976 336 3e-87 seq3112 109 7e-19 >seq976 Length=29826 Score = 336 bits (372), Expect = 3e-87 Identities = 971/1458 (67%), Gaps = 62/1458 (4%) Strand=Plus/Minus Query 71479 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACG 71538 ||||| ||||| ||| | ||||| | | ||||| | ||||||| ||||| | | Sbjct 23386 GCTTCGGGGCTGTCATAAGGATACCTCATTTTCATAAAGGTATCTGCTAGACCTTGTATG 23327 Query 71539 CCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAA 71598 || || || || ||||| || | | |||| || | || ||||| || | |||||| | Sbjct 23326 CCGATTCCAATTGGTCTATGGCGCATATTGGAGAGTTTAGCTTGAGGCAGTGGATAAAAG 23267 Query 71599 TTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCA-CATCCTTTAGTTT 71657 || ||||| |||| || || ||||| || || |||||| | | || |||| || || Sbjct 23266 TTGATATCAATAACCTTGTTTAGATTCTTGGTGATGACTTTGGCAATCAACCTT-AGCTT 23208 Query 71658 GAGAAAATCAAATCTC---CCATCTA---TTACAAACACGTTCAAGGCA-ACAGATGCCA 71710 ||| || || ||| |||||| | ||||| | | |||| | | || |||| Sbjct 23207 TTCAAAGTCGAAACTCTTGCCATCTGCACTGACAAAGGC-TGGAAGGGAGATTGAGGCCA 23149 Query 71711 GATTACAAACGGCTACCTCATTAGC--ATCGGCATATTGTATAATTTCAGTGCAAAGATT 71768 | || || || || | ||||| || | | | |||| || |||||| ||||| ||||| Sbjct 23148 GGTTGCAGACTGCAATCTCATCAGGTGAACTG--TATTCTACAATTTCTGTGCACAGATT 23091 Query 71769 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 71828 | || ||||| || |||| ||| ||||| |||| ||||| ||||| || || Sbjct 23090 AGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAATTACAGGCATCTTTGTA 23031 Query 71829 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 71888 |||| | ||| |||||||||| || || | || | ||| || | ||| | | || Sbjct 23030 GAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATTGCGTACCACAACTCCCG 22971 Query 71889 AGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 71948 |||||| | | | ||||| |||||| | ||| ||||| ||| | | | ||| Sbjct 22970 AGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTTCATATTGAAGATAGAGTTCATTGAA 22911 Query 71949 CTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGACCACT 72007 || |||||| ||| | | | | ||| || |||||||| || |||||||| ||| | Sbjct 22910 CTTTGGTCCCCA-GCAATCTGCCAGTCCCGGGCATTCATTTGGGTCCATCAATGTCCATT 22852 Query 72008 CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 72066 | |||| | | || || | ||| || | ||| || |||||||| || ||| || || Sbjct 22851 CCTCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCAAAGGGC-ATAGAAGAGG 22793 Query 72067 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 72126 || | | ||| || || || ||||| ||| | | |||| || | | ||| Sbjct 22792 TCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTCGACAAAGGAGAAAATG 22733 Query 72127 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGA 72186 || | |||||| ||||| | || ||||| | | |||| || | || || ||||| || Sbjct 22732 TCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCTCTTATTACCTCCTTGG 22673 Query 72187 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 72246 || | || | ||||||||||||| | ||||| | ||| ||||| || ||||| ||| || Sbjct 22672 TCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAATGATGCCATTCGATTCA 22613 Query 72247 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG--CTAATTGATAGACCTA 72304 ||||| || || || || || ||| | | |||||| || | | ||| | || | Sbjct 22612 CCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGAATAGTGTGCACACTGA--GGCCAA 22555 Query 72305 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 72364 | || || || |||||||||| | || ||| |||| | || || || ||||| || | Sbjct 22554 TACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCTCGTATATGCCTTCAA 22495 Query 72365 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 72424 |||||||||| |||| |||| || || || || |||||||| | | ||| |||| Sbjct 22494 TACTATCATCATTCATTGTAAGGAGGAAGCAACTGGACATTTGTGGCTGCGGAGTGCCCG 22435 Query 72425 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA-TTGTACGTC 72483 ||||| | ||| ||||| ||||| || ||| | |||||||||| || | ||||| ||| Sbjct 22434 AGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTCAGACA-TATACTTGTAGGTC 22376 Query 72484 TCAATAGCTGATTCTA---TATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 | |||| || | ||||| | ||| || || | | || | |||||| | Sbjct 22375 ATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCAAGAGAAACTCTCATTAATAGG 22319 Query 72541 TGCTGAGGTCTTTCA-ACGATCTT---GTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 |||||||| || ||| ||| |||| ||||| | | || | ||| || ||||| | Sbjct 22318 TGCTGAGGCCTCTCATACG-TCTTGCCGTTATATCTCTT---GAGGTATGACTTTTCTAG 22263 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 || || || || |||||||||||| |||||||| ||| | || || |||| Sbjct 22262 GGTCTTGAATCCGAAATAGTTGTATTCAAAGTCTC--TCG-----AGTAGTCG-ATTGCA 22211 Query 72657 T--TTATCCTTATATTTGTTAACTA-TA-TCCATGGT-GATA-CTT--GAAATAATCGGA 72708 | ||| ||| || ||| ||| || | || || || | ||| |||| || || Sbjct 22210 TCATTAATTCTATGTTGGTTCTCTAGTACTAAATTGTAGAGAGCTTCAGAAACCATTGGC 22151 Query 72709 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 72768 ||||| | || || || |||| | | | | | | || | || || ||| ||| Sbjct 22150 GAATGGGTATTGTTCTTTGGGTTAATAAAATGGTAGAGGTCATGAATAACATCAGAAAAC 22091 Query 72769 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 72828 | ||| || ||||||||||| || || || ||||| ||||| || || |||| | Sbjct 22090 TTTGATTTGGTCTCCTTGTGTAGGTTGCTGACAGCGATTCTAGCGGCAAGTATTGCATGA 22031 Query 72829 TCTGGATGTTGTGTAGTACAAGTGGCTG---CTATT-TCTGCTGCCAGAGTGTCCAATTC 72884 || || | ||||| | ||||| | ||| ||||| | ||| |||||| || Sbjct 22030 TCGTTGTGGAGGGTAGT----GAGGCTGGCACAATTCTCTGCGGTAAGACTGTCCAGCTC 21975 Query 72885 TACCGTTGTTACTCCATT 72902 ||| |||||||||| ||| Sbjct 21974 TACGGTTGTTACTCTATT 21957 >seq3112 Length=23135 Score = 109 bits (120), Expect = 7e-19 Identities = 212/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 42314 TTTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 ||||| || ||| ||| || || || |||| ||| |||||||| |||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 || || || || ||||| || |||||| |||||| |||| || || || ||| Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 42434 CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 42493 || || | ||| | | ||||||| || |||||||| || || || || || |||| Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 42494 ACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTA 42553 ||||| | ||| | ||| || | | | | | ||||| |||| ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 42554 GATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAG 42613 ||||| || || ||||| || |||||||| || || | ||||||||||| | | |||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 42614 ATATCATGATATT 42626 | ||| | |||| Sbjct 4884 ACATCGTCGTATT 4872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671088235367000