Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3112 154 2e-32 >seq3112 Length=23135 Score = 154 bits (170), Expect = 2e-32 Identities = 301/439 (69%), Gaps = 12/439 (3%) Strand=Plus/Plus Query 125419 CCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGG 125478 |||| | || ||||| || |||||||||||||||| ||||| || || || || | Sbjct 5348 CCGAGCGGCTAGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAG 5407 Query 125479 CCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTA 125538 | || || ||| | ||||| || |||||| |||| || || || || || ||| | | Sbjct 5408 CGATATTCTGGATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCA 5467 Query 125539 TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGC 125598 | ||||| || || |||||||| ||||||||| ||| || ||| ||| | || Sbjct 5468 TCTCTCGCGATGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTA--AAC-ACATGA 5524 Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGT-CATCAACATTGTAACCGATGCCGTGAGG 125657 || || | | | || | || || ||| || || || |||| || ||| Sbjct 5525 ------AGAACAAACCTACCGTGGCCAAAGTGCATGAA-ATCGTTGCCGAAGCTGTGCTC 5577 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || ||||| || || ||| ||| |||| || || ||||||| |||||||||||| Sbjct 5578 ATTGAACAGGAATTCCTACGCGATGCCCTTCCTTGTAGTCTGATTGGAATGAACTGCAAG 5637 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 | ||||| ||||||| || |||||||| |||||||| ||| ||| || ||| Sbjct 5638 TTGATGTGTCAGTACATTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCTGTCGTGCCCA 5697 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837 ||| || ||| | | ||| |||||||| || ||| | || ||||| || || || Sbjct 5698 AAGTATTGGAACTCTACGAACCCCTTTGACTTTATGGAGAATATTTCACTGGAAGGGAAA 5757 Query 125838 ACCAACTTTTTCGAGAAGA 125856 || ||||||||||| |||| Sbjct 5758 ACAAACTTTTTCGA-AAGA 5775 Score = 104 bits (114), Expect = 3e-17 Identities = 200/292 (68%), Gaps = 5/292 (2%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| || | || ||||||||| ||||| |||||||| || |||||||| || | || Sbjct 4886 TGGCAATTTTATAAAAAGGCTGTCGCCTCTTTTTGGACTGTTGAAGAGGTTGACATATCG 4945 Query 125082 AAGGACCTGTACGATTGGGAG-ACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || ||||| | ||||| || || || |||| || || | ||| | ||||| Sbjct 4946 AAAGACCTCAAGCATTGGCAGGACCTCAAAGA-TGAA---GAACGCCACTTTCTCTCGCA 5001 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATT 125200 | |||||||||| || | ||| ||||||||| ||| ||||| || | | || Sbjct 5002 TGTGCTGGCCTTCTTCGCTGCTAGCGACGGAATCGTCCTCGAAAATCTCGTGGAAAGGTT 5061 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 || |||||| | | ||||| || | ||| ||| ||||| || || || Sbjct 5062 CTGCCAAGAGGTCAAGATTCCCGAAGCCAGAGCCTTCTACTCCTTCCAGATTGCAATAGA 5121 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||| | || ||||||||||||||| ||||||||||| |||||| ||||| Sbjct 5122 GAATATTCATTCGGAAATGTACTCTCTACTGATTGACACCTACATTAGCGAT 5173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741002925817000