Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1961 98.7 6e-16 seq5171 91.5 9e-14 >seq1961 Length=16662 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| | | | |||||||| | || ||||| ||||| || ||||| || || Sbjct 7706 CCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 7765 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | ||| ||||||||||| ||| ||| || | ||||||||| || | ||| Sbjct 7766 AGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 7825 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || |||| ||| || | | |||| |||| | || | || Sbjct 7826 ATACCCTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACC 7885 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || |||||||||||||| || || ||||| Sbjct 7886 TCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 >seq5171 Length=25613 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/206 (71%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG-GTCATC--CAA-TTGCTT 33228 || ||||| ||||| |||||||||||||| | ||||| | |||| ||| ||| || Sbjct 8049 GTTGACTCCTTTTGAATATTGTAATCAGATA----GAGTTCTGCCATCTTCAAGTTGTTT 8104 Query 33229 TCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTG 33288 ||| || ||||| || ||||| || | || || ||||| || || |||| Sbjct 8105 TCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTGGC 8164 Query 33289 TTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAG 33348 ||| || | | |||||||| ||| | ||| || || || || ||||| || ||||| Sbjct 8165 TTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGTAAG 8224 Query 33349 AGTTTTTACGAAAATTTGCATGTTTA 33374 |||||| || ||||| |||||| ||| Sbjct 8225 AGTTTTGACAAAAATCTGCATGGTTA 8250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318753998005350