Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5171 188 2e-42 seq1961 168 2e-36 seq3112 134 3e-26 >seq5171 Length=25613 Score = 188 bits (208), Expect = 2e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || ||||| | || || || || |||||||| || |||||| Sbjct 8019 CCACCTCTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGAT 8078 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| || ||||| ||||||||||| || || |||| | ||| ||||| ||||| Sbjct 8079 AGAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGA 8138 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| |||||||| ||||| ||||| || | || || || || ||| Sbjct 8139 ATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACC 8198 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||||||||| ||||| ||||| |||||||| Sbjct 8199 TCGAGGGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCAT 8245 >seq1961 Length=16662 Score = 168 bits (186), Expect = 2e-36 Identities = 179/235 (76%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 104326 ATTTATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTAT 104384 ||| ||| || ||||| || ||||| || | ||| | || || || || || || || | Sbjct 7698 ATTAATTGCCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGT 7757 Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 |||| || |||||||| |||||||| | ||| || |||||||| || || | || |||| Sbjct 7758 AGTCGGAAAGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGAT 7817 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 | || || || || || || || |||||||| | ||| || || || | | ||||| | Sbjct 7818 CTGGGGGGATACCCTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTG 7877 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||||||||| || |||||||||||||| ||||||||||| |||||||| Sbjct 7878 GCTCGACCTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 >seq3112 Length=23135 Score = 134 bits (148), Expect = 3e-26 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 || ||| |||| || || |||||||||||||| ||||| || || | || | ||| | Sbjct 4895 TATAAAAAGGCTGTCGCCTCTTTTTGGACTGTTGAAGAGGTTGACATATCGAAAGACCTC 4954 Query 268805 ATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTT 268864 | ||||| | | | ||| |||||| | ||| | || || | || || || Sbjct 4955 AAGCATTGGCAGGACCTCAAAGATGAAGAACGCCACTTTCTCTCGCATGTGCTGGCCTTC 5014 Query 268865 TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTA 268924 || || | ||| || || ||||| ||||||||| || || | |||||| |||||||| Sbjct 5015 TTCGCTGCTAGCGACGGAATCGTCCTCGAAAATCTCGTGGAAAGGTTCTGCCAAGAGGTC 5074 Query 268925 CAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCA 268984 ||||||| ||||||||| || ||| |||||||| || ||||| ||||||||||| Sbjct 5075 AAGATTCCCGAAGCCAGAGCCTTCTACTCCTTCCAGATTGCAATAGAGAATATTCATTCG 5134 Query 268985 GAGATGTACAGTCTATTAATAGATACTTATAT 269016 || |||||| |||| | || || || || || Sbjct 5135 GAAATGTACTCTCTACTGATTGACACCTACAT 5166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151308779826100