Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5171 140 3e-28 seq1961 111 1e-19 >seq5171 Length=25613 Score = 140 bits (154), Expect = 3e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | || ||||| | ||| || ||| || || ||||||||| Sbjct 8049 GTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCAAGTTGTTTTCCG 8108 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | |||||||||| ||||||||||||||||||||||| || || | ||| || || ||| Sbjct 8109 GCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTGGCTTTG 8168 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| ||||||| | | || || || | || || ||||| |||||||||||| Sbjct 8169 ACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGTAAGAGTT 8228 Query 94991 TTCACAAAGATCTGCATGCTTA 95012 || ||||| ||||||||| ||| Sbjct 8229 TTGACAAAAATCTGCATGGTTA 8250 >seq1961 Length=16662 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| || | ||| || |||||||| | ||| || ||| Sbjct 7706 CCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 7765 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||| || || || ||||||| | | |||||||||||| || Sbjct 7766 AGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 7825 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 ||||| || ||||| | ||| || | |||||| ||| | ||| || ||| ||||| Sbjct 7826 ATACCCTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTC-GCTTGGCTCGAC 7884 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || |||||||||||||| |||||||||||||| Sbjct 7885 CTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257157887000