Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2001 251 1e-62 seq3946 154 2e-33 >seq2001 Length=6172 Score = 251 bits (278), Expect = 1e-62 Identities = 217/269 (81%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| || |||||||| || ||||||||||| || || Sbjct 5017 CGCTAAGCGTCATCGCAAGGTTCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 5076 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| || |||||| ||||||| | ||||||| |||| Sbjct 5077 TCGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCTGGTCTCATCTATGAGGAGAC 5136 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||||| ||||| ||| |||||||| ||| || | ||| ||||| Sbjct 5137 TCGTGGTGTGTTGAAGATGTTCCTTGAGAACGTTATCCGTGACGCAGTGACCTACACCGA 5196 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| |||||||| | ||||||||||||||||| ||||| Sbjct 5197 GCACGCCAAGAGGAAGACTGTCACCGCCATGGATGTGGTCTATGCATTGAAACGCCAAGG 5256 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||| | | || ||||| ||| |||||| Sbjct 5257 CCGCACTCTGTACGGTTTCGGAGGTTAAT 5285 Score = 120 bits (132), Expect = 5e-23 Identities = 110/138 (80%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16564 GAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 |||||| ||||| ||| |||||||| ||| || | ||| ||||||||||| || | Sbjct 1 GAAGATGTTCCTTGAGAACGTTATCCGTGACGCAGTGACCTACACCGAGCACGCCAAGAG 60 Query 16624 TAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTA 16683 |||||||||||| |||||||| | ||||||||||||||||| |||||||| | | || Sbjct 61 GAAGACTGTCACCGCCATGGATGTGGTCTATGCATTGAAACGCCAAGGCCGCACTCTGTA 120 Query 16684 TGGTTTT-GGAAGTTAAT 16700 |||||| ||| |||||| Sbjct 121 CGGTTTTCGGAGGTTAAT 138 >seq3946 Length=31711 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||| | | ||| | || |||||||| |||||||| ||||| ||||| Sbjct 6340 CGCAAAGCGTCATAGAAAGGTTCTCAGGGACAACATCCAGGGAATCACTAAGCCTGCTAT 6399 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | ||| | |||||||| || || || |||| || | | ||||| |||| Sbjct 6400 ACGTCGTTTAGCTAGACGTGGTGGCGTTAAACGCATCTCCGGCCTTATTTATGAGGAGAC 6459 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | || || || ||| ||| ||||| | |||||| || ||| || || Sbjct 6460 CAGAGGTGTACTTAAAATGTTTCTCGAGAATGTTATTCGCGATGCTGTCACCTACACAGA 6519 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| |||||||| |||||||||| | || | ||||| Sbjct 6520 GCACGCAAAGAGAAAGACTGTCACCGCCATGGATGTCGTCTATGCCCTCAAGAGACAAGG 6579 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||||||||| ||| | ||| Sbjct 6580 CAGAACCCTTTATGGTTTCGGAGGCTAA 6607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069645584975