Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq976 279 6e-70 seq3112 118 1e-21 >seq976 Length=29826 Score = 279 bits (308), Expect = 6e-70 Identities = 779/1174 (66%), Gaps = 36/1174 (3%) Strand=Plus/Minus Query 62673 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62732 ||||| |||| ||| | ||||| | | ||||| | || |||| ||||| | Sbjct 23386 GCTTCGGGGCTGTCATAAGGATACCTCATTTTCATAAAGGTATCTGCTAGACCTTGTATG 23327 Query 62733 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62792 || || || || |||||||| | | |||| |||| || ||||| || | |||||| | Sbjct 23326 CCGATTCCAATTGGTCTATGGCGCATATTGGAGAGTTTAGCTTGAGGCAGTGGATAAAAG 23267 Query 62793 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA-CATCCTTCAGTTT 62851 || ||||| |||| || || ||||| || || |||||| | | || |||| || || Sbjct 23266 TTGATATCAATAACCTTGTTTAGATTCTTGGTGATGACTTTGGCAATCAACCTT-AGCTT 23208 Query 62852 GAGAAAATCAAATCGC---CCATCTA---TTACAAACATGTTCAAGGCA-ACAGATGCCA 62904 ||| || || | | |||||| | ||||| | |||| | | || |||| Sbjct 23207 TTCAAAGTCGAAACTCTTGCCATCTGCACTGACAAAGGC-TGGAAGGGAGATTGAGGCCA 23149 Query 62905 GATTACAAACGGCTACCTCATTAGC--ATCCGCATATTGTATTATCTCAGTGCAAAGATT 62962 | || || || || | ||||| || | | | |||| || || || ||||| ||||| Sbjct 23148 GGTTGCAGACTGCAATCTCATCAGGTGAACTG--TATTCTACAATTTCTGTGCACAGATT 23091 Query 62963 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63022 | || || || || |||| ||| ||||| |||| ||||| ||||| || || Sbjct 23090 AGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAATTACAGGCATCTTTGTA 23031 Query 63023 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63082 |||| | ||||| |||||||||| || || | || | ||| || | ||| | | || Sbjct 23030 GAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATTGCGTACCACAACTCCCG 22971 Query 63083 AGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 63142 |||||| | | | ||| || ||| | ||| ||| | ||| | | | ||| Sbjct 22970 AGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTTCATATTGAAGATAGAGTTCATTGAA 22911 Query 63143 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 63202 || |||||| || ||| ||| || ||||||| || |||||| | ||| || Sbjct 22910 CTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATTCATTTGGGTCCATCAATGTCCATTC 22851 Query 63203 TCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 63258 ||||||||| || || | ||| || | ||| || |||||||| || ||| || | Sbjct 22850 C---TCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCAAAGGGC-ATAGAAGA 22795 Query 63259 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63318 | || | | ||| ||| || || ||||| ||| | | |||| || | | || Sbjct 22794 GGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTCGACAAAGGAGAAAA 22735 Query 63319 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63378 | || | |||||| ||||| | || ||||| | | ||||||| | || || ||||| | Sbjct 22734 TGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCTCTTATTACCTCCTT 22675 Query 63379 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63438 | || | || | ||||||||||||| | ||||| | ||| ||||| || || || ||| Sbjct 22674 GGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAATGATGCCATTCGATT 22615 Query 63439 TACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACC 63496 |||||| || || || || || ||| | | |||||| | | | || || || Sbjct 22614 CACCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGAATAGTGTGCACACTG--AGGCC 22557 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || || |||||||||| | || ||| |||| | || || || || || || Sbjct 22556 AATACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCTCGTATATGCCTTC 22497 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 || |||||||| |||| |||| || || || || |||||||| | | ||| || Sbjct 22496 AATACTATCATCATTCATTGTAAGGAGGAAGCAACTGGACATTTGTGGCTGCGGAGTGCC 22437 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA-TTGTACG 63675 || ||||| | ||| ||||| ||||| || ||| | |||||||| | || | ||||| | Sbjct 22436 CGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTCAGACA-TATACTTGTAGG 22378 Query 63676 TCTCAATAGCTGAGTCTA---TATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 || | |||| || | ||||| | ||| || || | | || | |||||| | Sbjct 22377 TCATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCAAGAGAAACTCTCATTAATA 22321 Query 63733 TGTGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||||||| || ||| ||| ||||| ||| | || | ||| || ||||| | Sbjct 22320 GGTGCTGAGGCCTCTCATACG-TCTTGCCGTTATATCTCTTGAGGTATGACTTTTCTAGG 22262 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 || || || || |||||||||||| |||||||| Sbjct 22261 GTCTTGAATCCGAAATAGTTGTATTCAAAGTCTC 22228 >seq3112 Length=23135 Score = 118 bits (130), Expect = 1e-21 Identities = 220/323 (68%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 33553 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 ||||| || ||| ||| || || || |||| ||| ||||||||||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 || || || || ||||| || |||||| ||| || |||| ||||| || ||| Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 || || | |||| | | |||||| || |||||||| || || || || || |||| Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 ||||| | ||| | ||| || | | || | | ||||| |||| ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 ||||| || || ||||| || |||||||| || || | ||||||||||| | | |||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 33853 ATGTCATAATATTGGATTGGGAA 33875 | || | |||| || ||||| Sbjct 4884 ACATCGTCGTATTTGACGGGGAA 4862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622899894947000