Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5171 113 4e-20 seq1961 100 3e-16 seq3112 95.1 1e-14 >seq5171 Length=25613 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| ||| | || ||| |||| | || | Sbjct 8245 ATGCAGATTTTTGTCAAAACTCTTACTGGTAAAACTATTACCCTCGAGGTTGAGCCCTCT 8186 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | |||||| |||||| || || ||||| || ||||| ||||| Sbjct 8185 GACACGATCGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 8126 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||| |||||||| ||||||| |||| | || || || Sbjct 8125 CAGCGATTAATCTTCGCCGGAAAACAACTTGAAGATGGCAGAACTCTATCTGATTACAAT 8066 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || || || | ||||| ||||| ||||||||||| || Sbjct 8065 ATTCAAAAGGAGTCAACCCTTCATCTCGTCCTCAGACTTAGAGGTGG 8019 >seq1961 Length=16662 Score = 100 bits (110), Expect = 3e-16 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||| || | || || | || | || ||| | Sbjct 7932 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCGAGCCAAGC 7873 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | |||||| | |||||| |||||| ||||| || || || || || ||||| Sbjct 7872 GACTCGATCGAGAACGTCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAGATCAG 7813 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || || ||| | ||||| | |||| | |||||| ||| Sbjct 7812 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACTACAAC 7753 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA--AATATGAT 27006 || ||||| || || ||| | ||| ||||||| ||||| ||||| || || ||| || | Sbjct 7752 ATCCAAAAGGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGCGGCAATTAATTTGTT 7693 Query 27007 TA 27008 || Sbjct 7692 TA 7691 >seq3112 Length=23135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 234/347 (67%), Gaps = 15/347 (4%) Strand=Plus/Minus Query 119646 TACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATA 119705 || || || |||||| |||| ||||| || || || || || || || || || | |||| Sbjct 5789 TAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCTCCATA 5730 Query 119706 AACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGA 119765 || || || || || | || ||| ||| ||| | | || ||| | || ||| ||| Sbjct 5729 AAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGACAGCTCCACCAGCAGACGA 5670 Query 119766 TCTGCCACAAACTCGATGTATTCGCACATGGA-TTGCGAATTCATGCCCAACATAGCGAC 119824 || |||||||| || ||||| | ||||| | |||| | ||||| || | || | | || Sbjct 5669 TCGGCCACAAATTCAATGTACTGACACATCAACTTGC-AGTTCATTCCAATCAGA-CTAC 5612 Query 119825 CGGTAAAG-CATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACATACTCA 119883 | || | ||| | | ||| |||| ||||||| || ||||| ||| || ||| Sbjct 5611 AAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGATT-TCA 5553 Query 119884 A-CACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGACAA 119942 ||| |||| | || | |||||||| || | |||| | | ||||| Sbjct 5552 TGCACTTTGGCCACGGTAGGTTTGTTCTTC------ATGTGTTTAAAGAGG---AGACAG 5502 Query 119943 GCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCT 119989 ||||||||||| ||||| ||||| || | || ||||| || ||||| Sbjct 5501 GCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCT 5455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478626051574000