Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3112 91.5 1e-13 seq1961 89.7 4e-13 >seq3112 Length=23135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 104586 CCGTTTG-TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATAT 104644 || |||| || || || || ||| |||| ||||| || || || || ||||| ||||||| Sbjct 5797 CCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATAT 5738 Query 104645 TATTCATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCA 104704 | | |||||| || || || ||| || || |||| ||| | | ||||| | || Sbjct 5737 TCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGACAGCTCCACCA 5678 Query 104705 ACAGTCGATCCGCCACAAATTCGATGTACTCGCACAT 104741 ||| ||||| ||||||||||| ||||||| ||||| Sbjct 5677 GCAGACGATCGGCCACAAATTCAATGTACTGACACAT 5641 >seq1961 Length=16662 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | ||||| || | || || | || |||||| | | | Sbjct 7932 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCGAGCCAAGC 7873 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | |||||| | |||||| |||||| ||||| || || || || || ||||| Sbjct 7872 GACTCGATCGAGAACGTCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAGATCAG 7813 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | || |||||| | ||||| | |||| | ||| || ||| Sbjct 7812 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACTACAAC 7753 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || || ||||||| || | ||| | ||||| || Sbjct 7752 ATCCAAAAGGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGCGG 7706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429904167941625