Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4788 131 1e-25 seq5171 98.7 7e-16 seq1961 98.7 7e-16 >seq4788 Length=4699 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 565 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 624 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 625 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 659 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2691 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 2750 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 2751 ACCAATATTTAGCTTTA 2767 >seq5171 Length=25613 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||||||||| | | | || | |||||| || |||||||||||||||||||||||| Sbjct 8018 ACCACCTCTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGA 8077 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | | || || | |||||||||||| || |||| || || ||||| | || Sbjct 8078 TAGAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGG 8137 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || || ||| || || ||||||| || || || ||||| Sbjct 8138 AATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAAC 8197 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | |||||||||||||| || | ||||| || || ||||||||| || Sbjct 8198 CTCGAGGGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCATGGTT 8249 >seq1961 Length=16662 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||||||| ||||||||| || ||||| || || | | | | |||| || Sbjct 7724 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTTCCGTCTTCC 7783 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| || || ||||| || || ||||| ||||| | ||||| || || ||||| | Sbjct 7784 AATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCCTTGTCTTGA 7843 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || || |||| || | || | || || |||| ||| || || ||| Sbjct 7844 ATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGTTATGGTCTTA 7903 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| || || |||||||| Sbjct 7904 CCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334922400823325