Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq976 315 9e-81 seq3112 114 2e-20 >seq976 Length=29826 Score = 315 bits (348), Expect = 9e-81 Identities = 787/1174 (67%), Gaps = 36/1174 (3%) Strand=Plus/Minus Query 62528 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 62587 ||||| |||| ||| | ||||| | | ||||| | ||||||| ||||| | Sbjct 23386 GCTTCGGGGCTGTCATAAGGATACCTCATTTTCATAAAGGTATCTGCTAGACCTTGTATG 23327 Query 62588 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62647 || || || || |||||||| | | |||| |||| || ||||| || | |||||| | Sbjct 23326 CCGATTCCAATTGGTCTATGGCGCATATTGGAGAGTTTAGCTTGAGGCAGTGGATAAAAG 23267 Query 62648 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA-CATCCTTCAGTTT 62706 || ||||| |||| || || ||||| || || |||||| | | || |||| || || Sbjct 23266 TTGATATCAATAACCTTGTTTAGATTCTTGGTGATGACTTTGGCAATCAACCTT-AGCTT 23208 Query 62707 GAGAAAATCAAATCGC---CCATCTA---TTACAAACATGTTCAATGCA-ACAGATGCCA 62759 ||| || || | | |||||| | ||||| | || | | | || |||| Sbjct 23207 TTCAAAGTCGAAACTCTTGCCATCTGCACTGACAAAGGC-TGGAAGGGAGATTGAGGCCA 23149 Query 62760 GATTACAAACGGCTACCTCATTAGC--ATCCGCATATTGTATTATCTCAGTGCAAAGATT 62817 | || || || || | ||||| || | | | |||| || || || ||||| ||||| Sbjct 23148 GGTTGCAGACTGCAATCTCATCAGGTGAACTG--TATTCTACAATTTCTGTGCACAGATT 23091 Query 62818 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 62877 | || ||||| || |||| ||| ||||| |||| ||||| ||||| || || Sbjct 23090 AGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAATTACAGGCATCTTTGTA 23031 Query 62878 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 62937 |||| | ||||| |||||||||| || || | || | ||| || | ||| | | || Sbjct 23030 GAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATTGCGTACCACAACTCCCG 22971 Query 62938 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 62997 |||||| | | | ||| |||||| | ||| ||| | ||| | | | ||| Sbjct 22970 AGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTTCATATTGAAGATAGAGTTCATTGAA 22911 Query 62998 CTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTC 63057 || |||||| || ||||||| || ||||||| || |||||| | ||| || Sbjct 22910 CTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATTCATTTGGGTCCATCAATGTCCATTC 22851 Query 63058 TCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 63113 ||||||||| || || | ||| || | ||| || |||||||| || ||| || | Sbjct 22850 C---TCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCAAAGGGC-ATAGAAGA 22795 Query 63114 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63173 | || | | ||| ||| || || ||||| ||| | | |||| || | | || Sbjct 22794 GGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTCGACAAAGGAGAAAA 22735 Query 63174 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63233 | || | |||||| ||||| | || ||||| | | ||||||| | || || ||||| | Sbjct 22734 TGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCTCTTATTACCTCCTT 22675 Query 63234 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 63293 | || | || | ||||||||||||| | ||||| | ||| ||||| || ||||| ||| Sbjct 22674 GGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAATGATGCCATTCGATT 22615 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACC 63351 |||||| || ||||| || || ||| | | |||||| | | | || || || Sbjct 22614 CACCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGAATAGTGTGCACACTG--AGGCC 22557 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || || |||||||||| | || ||| |||| | || || || ||||| || Sbjct 22556 AATACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCTCGTATATGCCTTC 22497 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 ||||||||||| |||| |||| || || || || |||||||| | | ||| || Sbjct 22496 AATACTATCATCATTCATTGTAAGGAGGAAGCAACTGGACATTTGTGGCTGCGGAGTGCC 22437 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA-TTGTACG 63530 || ||||| | ||| ||||| |||||||| ||| | |||||||| | || | ||||| | Sbjct 22436 CGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTCAGACA-TATACTTGTAGG 22378 Query 63531 TCTCAATAGCTGAGTCTA---TATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 || | |||| || | ||||| | ||| || || | | || | |||||| | Sbjct 22377 TCATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCAAGAGAAACTCTCATTAATA 22321 Query 63588 TGTGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||||||| || ||| ||| ||||| ||| | || | ||| || ||||| | Sbjct 22320 GGTGCTGAGGCCTCTCATACG-TCTTGCCGTTATATCTCTTGAGGTATGACTTTTCTAGG 22262 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 || || || || |||||||||||| |||||||| Sbjct 22261 GTCTTGAATCCGAAATAGTTGTATTCAAAGTCTC 22228 >seq3112 Length=23135 Score = 114 bits (126), Expect = 2e-20 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 32910 TTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 ||||| || ||| ||| || || ||||||| ||| ||||||||||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029 || || || || || || || ||||||| ||| || |||| ||||| || ||| Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089 || || | ||| | | |||||| || |||||||| || || || || || |||| Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 33090 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33149 ||||| | ||| | ||| || | | || | | ||||| |||| ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 33209 ||||| || || ||||| || |||||||| || || | ||||||||||| | | |||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAAGAGGCGACAGCCTTTTTATAAAATTGCCAG 4885 Query 33210 A 33210 | Sbjct 4884 A 4884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633583883570000