Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3112 150 2e-31 >seq3112 Length=23135 Score = 150 bits (166), Expect = 2e-31 Identities = 355/524 (68%), Gaps = 18/524 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||| ||| ||||| || |||||||| | |||| || || ||||| || ||||| Sbjct 5808 CATAACGCCAGCCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTC 5749 Query 92850 CAAAGATATCGAATTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCAC- 92903 || || || |||| | | | | || ||| | | ||| |||||||| | Sbjct 5748 CAGTGAAAT---ATTCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCA 5692 Query 92904 CGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963 ||| || ||| || | | ||| || |||||||| ||||||||| ||||||| | | Sbjct 5691 CGA-CAGCTCCACCAGCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGC 5633 Query 92964 AATTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 | |||||||| | |||| |||| || || || ||| | ||| || | || || | Sbjct 5632 AGTTCATTCCAATCAGAC-TACAAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGC 5574 Query 93023 ACGGCTTCTTTCAAGATTTCTATTACTCTA-CTATTTGGTGGTTTTTGTACGACATAATT 93081 || ||||| | |||||| ||| | | | ||| | ||| || | ||| | Sbjct 5573 ACAGCTTCGGCAACGATTTCATGCACTTTGGCCAC--GGTAGGTTT-GTTCTTCATGTGT 5517 Query 93082 GTACATTA-AG-CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 || | || || |||||||||||||||| ||||| || || || || | ||||||| Sbjct 5516 TTAAAGAGGAGACAGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTG 5457 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 || || || | ||| || || ||||| |||||||| | ||| ||||| | || || Sbjct 5456 CTAAAGGTGAGACCCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGAC 5397 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || ||||| || || ||||| | ||| ||||| | || |||| ||| |||| | Sbjct 5396 CCAGAGAAGAATATGCCCTCTACGGCGGAAAAGGCCACTAGCCGCTCGGAAAAGTTTGAG 5337 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 || ||||||||| | |||||||||||||| ||||| Sbjct 5336 TTCATATCCGAGATCCATTTGAGGGCCCAATCGGCTTTCTTCTT 5293 Score = 122 bits (134), Expect = 1e-22 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||||| |||||||| ||||| | |||||| |||||||| ||| Sbjct 5166 ATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATATTCTCTATTGCAATCTGG 5107 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||| ||| ||||| | |||| || ||||| | || || || |||||| Sbjct 5106 AAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGGCAGAACCTTTCCACGAGA 5047 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||| ||| || || ||| || || || || |||| | |||| | ||| || Sbjct 5046 TTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGCACATGCGAGAGAAAGTGG 4987 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 || |||||||| || | | ||||| || ||||| || | || || ||||| Sbjct 4986 CGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTCGATATGTCAACCTCTTCA 4927 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 ||||||||||| || || | || ||||| || Sbjct 4926 ACAGTCCAAAAAGAGGCGACAGCCTTTTTATA 4895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556818513383000