Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1961 134 3e-26 seq5171 132 9e-26 seq5473 105 1e-17 >seq1961 Length=16662 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || |||||||| ||||||||||| || ||||| || || || || ||||| Sbjct 7724 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTTCCGTCTTCC 7783 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || || | ||| || || || || || || |||||||||||| Sbjct 7784 AATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCCTTGTCTTGA 7843 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | |||||| |||||| | ||| || || || || | || ||||| || Sbjct 7844 ATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGTTATGGTCTTA 7903 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || || || || || || || |||||||| || Sbjct 7904 CCAGTAAGAGTTTTTACAAAGATCTGCATAAT 7935 >seq5171 Length=25613 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| ||||| || || ||||| || || || || |||||||| | || Sbjct 8043 TGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCAAGTTGT 8102 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || | || || || || || ||||| |||||||| ||||||||||| Sbjct 8103 TTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTG 8162 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || ||||| |||||| ||||| | | || || || | ||| || ||||| || || Sbjct 8163 GCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGTA 8222 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || |||||||| Sbjct 8223 AGAGTTTTGACAAAAATCTGCAT 8245 >seq5473 Length=10946 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 268355 GCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGG 268414 |||| ||| | || || |||| || ||||| |||| || | | ||| ||||||||| Sbjct 3770 GCAACACCAAGTGTAATCTTTCTAGTAACGAAGTTCTCTCCCCTTCTAGGACTCTCGTGG 3829 Query 268415 TTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTC 268474 || ||||| || || ||||| ||||| | ||| || ||||| ||| ||| | |||| | Sbjct 3830 TTAAAGAGAATTCCATTGCAAGCGAATAGGCCGTAAGCCTCTTTGTAATTCTCAACCGAC 3889 Query 268475 CAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATC 268534 || || || |||| |||||| || || |||||| | |||||||| || || | | Sbjct 3890 CAATAAGCGAACAACTTTGCGACCGCATACGGACTCAGCGGATGGAATGGAGTGGACTCC 3949 Query 268535 TTTTGAGGGATTTCTCGGACTTTGCC 268560 ||||| || |||| | ||| || || Sbjct 3950 TTTTGTGGCGTTTCACTGACGTTTCC 3975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921552414299000