Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3112 141 1e-28 seq944 113 5e-20 seq521 86.0 7e-12 >seq3112 Length=23135 Score = 141 bits (156), Expect = 1e-28 Identities = 283/417 (68%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 ||||||||||| || | ||||| |||||||| ||||| |||| |||||||||||| Sbjct 5789 TAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCTCCATA 5730 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 || ||||| |||||| | ||||||||| | | | ||||| | | || || ||||| Sbjct 5729 AAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGAC-AGCTCCACCAGCAGACG 5671 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||| | || | |||||||||| | ||||| || ||||||| || || || |||| Sbjct 5670 ATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGACTACA 5611 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || || || || | ||| ||| ||||| ||| ||||| ||||| | || Sbjct 5610 AGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGATTTCATG 5551 Query 125998 AATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTG 126057 | || |||| |||| | || || || ||||| |||||| || Sbjct 5550 CACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAGAGGAGACAGGCAAAGTCGGT 5491 Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 || || || || || || |||||||| ||||| ||| || || |||| ||| || Sbjct 5490 ATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGCAAGAGTCC 5431 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 || ||||||| |||||| ||||| || || || |||||||| || ||||| || Sbjct 5430 ACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCCTCTAC 5374 >seq944 Length=39427 Score = 113 bits (124), Expect = 5e-20 Identities = 381/581 (66%), Gaps = 18/581 (3%) Strand=Plus/Plus Query 10616 GCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTT 10675 ||| |||| || ||||||||||||| || | | || |||||||| || || |||| Sbjct 21702 GCGAGGATAGCCGACTCATTGAGGAGATTTCCGAGCTCAGCACCAGAAAATCCGATCGTG 21761 Query 10676 TGCTTTGCGATGGCGTGTAGCTTC--ACATCGTCAGCCAACTTCTTGTCTCTGGCGTGGA 10733 ||||| || | | || ||||| ||||| || ||| || |||| |||| Sbjct 21762 ATACCAGCGATA-CGA-TCCCATCTGACATCATCAGCAAAAGGCTTTCCTTTGGCATGGA 21819 Query 10734 CACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAA 10793 | | | ||||| | ||| | | | |||||| | | || | ||| ||||||| Sbjct 21820 CTTCGAGGATCTTTTTACGATCTTCGAGAGTGGGTAAGTTGATCGTCACCTTGCGATCAA 21879 Query 10794 AGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC---GA 10850 | || ||||| ||||| ||||| || |||| |||| || || ||||| || || Sbjct 21880 ATCGTCCTGGTCGGAGTAGGGCACTATCGAGGACATCAGCACGATTGGTCGCTGCCATGA 21939 Query 10851 TGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGG 10910 ||| || || ||||| || ||||| ||||||||||| || | | ||||||| | Sbjct 21940 TGATCACATTG---GTCTCATTGTCAAATCCATCCATCTCCGTGAGTATCTGATTGAGAG 21996 Query 10911 TTTGTTCGCGTTCATCAT-TC--GCGGGCATACCACCCGCACTGCGTTGCTTACCGACGG 10967 | ||||| || ||||||| || | |||||| || | || || || || | | Sbjct 21997 TCTGTTCTCGCTCATCATGTCCACCTCCGATACCAGGCG-ATCGCTTT--TTCCCTATAG 22053 Query 10968 CGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATAT 11027 | || || || ||||| || | ||| | || || |||||| || | ||||| || Sbjct 22054 CATCGATCTCGTCGATAAATATGATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGAT 22113 Query 11028 CTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATT 11087 ||||||| | ||||| ||||| |||||||| || ||||| | | | | | || Sbjct 22114 CTCGGACACGAGCAGCACCCACACCGACAAACATCTCGACAAACTCAGATCCAG-ATATA 22172 Query 11088 G-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 11146 | || || || || | || || |||| |||| |||||| || ||||| || || Sbjct 22173 GAGAAAAATGGTACTTCACTCTCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGTT 22232 Query 11147 CCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGC 11187 || || || | | ||| ||| ||||||||| |||| Sbjct 22233 CCTGGAGGTCCCACCATCAGGATACCTCGTGGGATCTTGGC 22273 >seq521 Length=11783 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 ||||||||||||||| || || | || ||||| |||| ||| || || || Sbjct 2146 GGCGTCAATTTCATCAATAAACAAAATGCACGGGGCCTTTTGACGTGCCTGAGAGAACAT 2205 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 |||| || ||||| | ||||| |||||||||||||| | | || | || | | | | Sbjct 2206 GTCTCTCACCCTCTTCGGGCCGACGCCCACAAACATTTCTA-AGAACTCGCTACCGGAAA 2264 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 ||| | ||||||||| || | ||| || || | || ||| | ||||||||| |||| Sbjct 2265 TTGTAAGGAAGGGGACATTTGCTTCGCCAGCAGTAGCCTTGGCCAAGAGGGTCTTTCCCG 2324 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 | || ||| ||| ||| | || ||||| |||||| | || || Sbjct 2325 TACCCGGTGGCCCCTTGAGGATTGCCCCACGAGGGATCTTTGCGCC 2370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597308238461000