Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5171 118 1e-21 seq1961 105 7e-18 seq3112 100 3e-16 >seq5171 Length=25613 Score = 118 bits (130), Expect = 1e-21 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTT 138469 ||| | | |||||||||||||||| ||||| || | ||| | || | || || |||| Sbjct 8042 ATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCA-TCTTCAAGTT 8100 Query 138470 GTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTT 138529 |||| |||| |||||| ||||| || || ||||| |||||||| || || ||| | Sbjct 8101 GTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCT-TGAATC 8159 Query 138530 TTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 || | ||| | | || | ||||| | | ||| ||||||| || | ||||||||| Sbjct 8160 TTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCA 8219 Query 138589 GTCAGAGTTTTTACAAAAATCTGCATGG 138616 || |||||||| |||||||||||||||| Sbjct 8220 GTAAGAGTTTTGACAAAAATCTGCATGG 8247 >seq1961 Length=16662 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | ||| | ||| || | ||| ||||| | | Sbjct 7739 GACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTTCCGTCTTCCAATTGCTTACCAGCA 7798 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT-AA 138539 |||| ||||| || || || || || ||||| || ||||| ||| | || ||||| | Sbjct 7799 AAGATAAGACGTTGCTGATCTGGGGGGATACCCTCCTTGTC-TTGAATCTTGGTTTTGAC 7857 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | | |||| | | ||| ||||| | || | || |||||||| |||||||| Sbjct 7858 GTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGTTATGGTCTTACCAGTAAGAGTTTT 7917 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 7918 TACAAAGATCTGCAT 7932 >seq3112 Length=23135 Score = 100 bits (110), Expect = 3e-16 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724 ||| | || |||||| ||| ||||| ||||||| || |||||||| ||||||||| Sbjct 5617 CTGATTGGAATGAACTGCAAGTTGATGTGTCAGTACATTGAATTTGTGGCCGATCGTCTG 5676 Query 52725 TTGGTGCAGCT--CGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGA 52782 ||||| |||| || || |||||||| | ||| || || || ||||| |||||| Sbjct 5677 CTGGTGGAGCTGTCGTGC--CCAAAGTATTGGAACTCTACGAACCCCTTTGACTTTATGG 5734 Query 52783 ACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 | || ||||| || || || || || ||||||||||| | || || || || ||| Sbjct 5735 AGAATATTTCACTGGAAGGGAAAACAAACTTTTTCGAAAGACGTGTTGGGGACTAT 5790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496224715074000