Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3112 140 3e-28 seq5171 120 3e-22 >seq3112 Length=23135 Score = 140 bits (154), Expect = 3e-28 Identities = 288/425 (68%), Gaps = 5/425 (1%) Strand=Plus/Plus Query 47159 CGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGG 47218 ||| |||||| | |||||||| || ||| || |||||||| | ||||| | || Sbjct 5373 CGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAGCGATATTCTGGATGAAGAAACGTGG 5432 Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278 | | |||| || ||||| |||||||| ||||| ||||| | || |||||||| || || Sbjct 5433 ACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCATCTCTCGCGATGAAGGCCTACATAC 5492 Query 47279 CAACTTTGCCTGTCT-CTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCG 47337 | ||||||||||||| || | ||||| || || |||| | |||| ||| | Sbjct 5493 CGACTTTGCCTGTCTCCTCTTTAAACACATGA--AGAACAAACCT--ACCGTGGCCAAAG 5548 Query 47338 TCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGC 47397 | || || |||||||||| || |||||| ||| || | ||| || || | Sbjct 5549 TGCATGAAATCGTTGCCGAAGCTGTGCTCATTGAACAGGAATTCCTACGCGATGCCCTTC 5608 Query 47398 CCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCG 47457 | | | | ||||||||| || ||||| | ||||||| |||||||| |||| Sbjct 5609 CTTGTAGTCTGATTGGAATGAACTGCAAGTTGATGTGTCAGTACATTGAATTTGTGGCCG 5668 Query 47458 ACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGT 47517 | || ||||| || |||| || || ||| || || | ||| || || || | Sbjct 5669 ATCGTCTGCTGGTGGAGCTGTCGTGCCCAAAGTATTGGAACTCTACGAACCCCTTTGACT 5728 Query 47518 TTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAAT 47577 ||||| | || ||||| || || || || || ||||||||||| | || || || || | Sbjct 5729 TTATGGAGAATATTTCACTGGAAGGGAAAACAAACTTTTTCGAAAGACGTGTTGGGGACT 5788 Query 47578 ATAAA 47582 || || Sbjct 5789 ATCAA 5793 >seq5171 Length=25613 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||||||||||||||| | || | ||| || || |||||||| Sbjct 8049 GTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCAAGTTGTTTTCCG 8108 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| |||| |||||||||||||| ||||| || || ||||| | | ||| | | || || Sbjct 8109 GCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTAT-CTTGAATCTTGGCTTT 8167 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| ||||| | ||| || |||| ||| | ||||| || || ||||| Sbjct 8168 GACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGTAAGAGT 8227 Query 127096 TTTTACAAAAATCTGCATGG 127115 ||| |||||||||||||||| Sbjct 8228 TTTGACAAAAATCTGCATGG 8247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475464691658000