Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5171 134 1e-26 seq1961 84.2 2e-11 >seq5171 Length=25613 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||| |||||||| ||||| ||||| | ||| | ||| || Sbjct 8037 ACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCA 8096 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| ||| | || ||||| ||||| || || ||||| ||||| ||||||||| Sbjct 8097 AGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGA 8156 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||||| || | ||| || ||||| |||| ||||| Sbjct 8157 ATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTA 8216 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||||||| |||||||| ||||| Sbjct 8217 CCAGTAAGAGTTTTGACAAAAATCTGCAT 8245 >seq1961 Length=16662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || | ||| || | || | ||| || || || ||||||||||| || || ||| Sbjct 7706 CCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 7765 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || |||||||| || || || | || | |||||||| || || || Sbjct 7766 AGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 7825 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || |||||||| || ||||| || | || | | |||| | |||||| Sbjct 7826 ATACCCTCCTTGTCTTGAATCTTGGTTTTGA-CGTTCTCGATCGAGTCGCTTGGCTCGAC 7884 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || || |||||||||||||| || ||||| Sbjct 7885 CTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451968876007000