Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3112 163 3e-35 seq944 113 6e-20 seq521 89.7 6e-13 >seq3112 Length=23135 Score = 163 bits (180), Expect = 3e-35 Identities = 311/450 (69%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 |||||||| || || | ||||| |||||||| ||||| || || |||||||||||| Sbjct 5789 TAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCTCCATA 5730 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || ||||| |||||| | ||||||||| | | | ||||| || || || ||||| Sbjct 5729 AAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGACAG-CTCCACCAGCAGACG 5671 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 ||| | || | |||||||||| | ||||| || ||||||| || || || |||| Sbjct 5670 ATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGACTACA 5611 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || || || || | ||| ||| |||||| ||||||||| ||||| | || Sbjct 5610 AGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGATTTCATG 5551 Query 127471 AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAA-GAGTTCCACAG-CAAACTCT 127528 | || |||| |||| | || | | | || || || ||| |||| |||| || Sbjct 5550 CACTTTGGCCACGGTAGGTTTGTT-CTTCATGTGTTTAAAGAGGAG-ACAGGCAAAGTCG 5493 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 || || || || || || |||||||| ||||| ||| ||||| |||| ||| Sbjct 5492 GTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGCAAGAGT 5433 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || || ||||||| |||||| ||||| || || ||||||||||| || ||||| || Sbjct 5432 CCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCCTCTACG 5373 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAAG 127678 | || || | ||| ||||||| |||| Sbjct 5372 GCGGAAAAGGCCACTAGCCGCTCGGAAAAG 5343 >seq944 Length=39427 Score = 113 bits (124), Expect = 6e-20 Identities = 383/582 (66%), Gaps = 20/582 (3%) Strand=Plus/Plus Query 12531 GCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTT 12590 ||| |||| || ||||||||||||| || | | || |||||||| || || |||| Sbjct 21702 GCGAGGATAGCCGACTCATTGAGGAGATTTCCGAGCTCAGCACCAGAAAATCCGATCGTG 21761 Query 12591 TGCTTTGCGATGGCGTGTAGCTTC--ACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGA 12648 ||||| || | | || ||||| ||||| || ||| || ||| |||| Sbjct 21762 ATACCAGCGATA-CGA-TCCCATCTGACATCATCAGCAAAAGGCTTTCCTTTGGCATGGA 21819 Query 12649 CACCCAAAATCTTCTCGCG-TCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCA 12707 | | | ||||| | || || || | | |||||| | | || | ||| |||||| Sbjct 21820 CTTCGAGGATCTTTTTACGATCTTCG-AGAGTGGGTAAGTTGATCGTCACCTTGCGATCA 21878 Query 12708 AAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC---G 12764 || || ||||| ||||| ||||| || |||| |||| || || ||||| || | Sbjct 21879 AATCGTCCTGGTCGGAGTAGGGCACTATCGAGGACATCAGCACGATTGGTCGCTGCCATG 21938 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 |||| || || ||||| || || || ||||||||||| || | | ||||||| Sbjct 21939 ATGATCACATTG---GTCTCATTGTCAAATCCATCCATCTCCGTGAGTATCTGATTGAGA 21995 Query 12825 GTTTGTTCACGTTCATCAT-TC--GCGGGCATACCACCCGCACTGCGTTGCTTACCGACG 12881 || ||||| || ||||||| || | |||||| || | || || || || | Sbjct 21996 GTCTGTTCTCGCTCATCATGTCCACCTCCGATACCAGGCG-ATCGCTTT--TTCCCTATA 22052 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 || || || ||||| || || | ||| | || || |||||| || | ||||| | Sbjct 22053 GCATCGATCTCGTCGATAAATATGATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGA 22112 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACAT 13001 ||||| || | ||||| ||||| ||||||||||| ||||| | | | | | || Sbjct 22113 TCTCGGACACGAGCAGCACCCACACCGACAAACATCTCGACAAACTCAGATCCAG-ATAT 22171 Query 13002 TG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 13060 | || || || || | || || |||| |||| |||||| || ||||| || || Sbjct 22172 AGAGAAAAATGGTACTTCACTCTCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGT 22231 Query 13061 CCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGC 13102 ||||| ||| | | ||| ||| ||||||||| |||| Sbjct 22232 TCCTGGAGGTCCCACCATCAGGATACCTCGTGGGATCTTGGC 22273 >seq521 Length=11783 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 12940 |||||||||||| ||||| || | || ||||| |||| ||| || || || Sbjct 2146 GGCGTCAATTTCATCAATAAACAAAATGCACGGGGCCTTTTGACGTGCCTGAGAGAACAT 2205 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 13000 |||| ||| ||||| | ||||| ||||||||||| || | | || | || | | | | Sbjct 2206 GTCTCTCACCCTCTTCGGGCCGACGCCCACAAACATTTCTA-AGAACTCGCTACCGGAAA 2264 Query 13001 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 ||| | ||||||||| || | ||| || || | || ||| | ||||||||| |||| Sbjct 2265 TTGTAAGGAAGGGGACATTTGCTTCGCCAGCAGTAGCCTTGGCCAAGAGGGTCTTTCCCG 2324 Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || ||| |||| ||| | || ||||| |||||| | || || Sbjct 2325 TACCCGGTGGCCCCTTGAGGATTGCCCCACGAGGGATCTTTGCGCC 2370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613460611797000