Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3112 107 2e-18 seq1961 93.3 4e-14 >seq3112 Length=23135 Score = 107 bits (118), Expect = 2e-18 Identities = 188/271 (69%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| || || || ||||||||||| || | ||||| || || || || || Sbjct 5164 GTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATATTCTCTATTGCAATCTGGAA 5105 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 | ||| ||| | || ||| | || || ||||| ||| | || || ||||| Sbjct 5104 GGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGGCAGAACCTTTCCACGAGATT 5045 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||| |||||| |||||||| || ||||| ||||||||||| ||| || || ||||| Sbjct 5044 TTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGCACATGCGAGAGAAAGTGGCG 4985 Query 133347 CTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCG-TGTCCTTGGACAGGTCCACCTCCTCGA 133405 || | || || | | || ||| | || | ||| || || | ||| ||||| || | Sbjct 4984 TTCTTCATCTTTGAGGTCCTGCCAAT-GCTTGAGGTCTTTCGATATGTCAACCTCTTCAA 4926 Query 133406 CGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 | |||||||| || || | || ||||| || Sbjct 4925 CAGTCCAAAAAGAGGCGACAGCCTTTTTATA 4895 >seq1961 Length=16662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| || || || || ||||| || | || |||||| | | | Sbjct 7932 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCGAGCCAAGC 7873 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||| | || | |||| | ||| || || | ||||| ||||| || ||| | || Sbjct 7872 GACTCGATCGAG--AACG-TCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAGAT 7816 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | || || || || |||| |||| | || || ||||||| Sbjct 7815 CAGCAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACTAC 7756 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||||| | || || |||||||| || | | ||||||||| Sbjct 7755 AACATCCAAAAGGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGCGGC 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500134818128000