Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2310 230 2e-54 seq4645 203 2e-46 seq5879 104 2e-16 seq3340 93.3 3e-13 >seq2310 Length=6049 Score = 230 bits (254), Expect = 2e-54 Identities = 942/1465 (64%), Gaps = 24/1465 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || ||||| || |||||||| | |||||| ||||| || ||||| ||||| Sbjct 2752 GCAGAAACGTTGAGAATGCCGTTGGCATCGATATCAAAAGTGACCTCGATTTGTGGGACA 2811 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| | ||||||| || || | | ||| | || || ||| || || || Sbjct 2812 CCTCTTGGGGCAGGTGCAATGCCAGAGAGCTCGAATTTACCAAGGAGATTGTTGTCCTTG 2871 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || |||||||| | | ||||| || | | || || || | || Sbjct 2872 GTCATGGCTCTCTCACCCTCATAGACCTGGATCAAGACACCTGGCTGGTTGTCAGCGTAG 2931 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || ||||| | | || ||| |||||| || | ||| || | || | | || Sbjct 2932 GTAGTAAAGGTTTGAGTTTGCTTAGTAGGAATGGTAGAGTTCCTCTTGATGAGGGAG-TC 2990 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || | ||| || || || || | ||| | || || |||| |||||| | ||| | || Sbjct 2991 ATCACACCGCCAGCGGTCTCGAGACCCAATGAGAGTGGAGCGACATCGAGTAGTAGAAGG 3050 Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | | | | | || | | | || || || ||||| || | ||| |||||||| Sbjct 3051 TCTAGGA---TGTCGTGCTTGTCTCCCTTGAGGATGGCTGCCTGGACAGCGGCACCATAG 3107 Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 517678 || ||||||||||||||||| | | | || || | | | || ||||| || | | Sbjct 3108 GCTACAGCTTCATCAGGATTGATCGACTTGTTGAGCTCTCTTCCGTTGAAGAAGTCTTGC 3167 Query 517679 AGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 517737 ||||| | ||| | ||| |||||||||| ||| ||||| || || ||||| || || | Sbjct 3168 AGAAGCT-TCTGAATCTTTGGAATACGAGTTGAACCTCCGACCAACACAATGTCGTGGAT 3226 Query 517738 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCCGCTC 517796 || | || |||| || | ||| || ||||| || |||| ||| | | | Sbjct 3227 CTTGGCCTTGTCCATGTTGGCATCTCTCAAGGACTTTTCGACTGGGTCCAATGTAC-CAC 3285 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA-GAGTGACATTATAA-TC 517854 |||||||| || || | |||||||| |||||| || | | || || || || Sbjct 3286 GGAACAAGTCCGAGCACATCTCTTCGAAACGAGCTCTGGTGATGCTTGTG--TAGAAGTC 3343 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 || || || | | ||| |||| || || | | |||||| || || || | | Sbjct 3344 AACACCGTCATAGAGAGAGTCAATCTCGATACTGGCTTGAGTGCTGGAGGAAAGGGTCCT 3403 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGATTCAAA 517972 || || | || || || ||||| | |||| | ||| | ||| || | | | Sbjct 3404 CTTGGCTCTCTCGCAGGCAGTCCTCAACCTTCTAACGGCCCTCTTGTTGTCGG--TGATC 3461 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCT-TCAACACACCATGTTACAAGACGATTATCAAA 518031 ||| | || | || |||||||| || | | | || |||||||| || || || Sbjct 3462 TCTTTCTTGTGCTTCCTCTTGAACTCAGTGATGAAGTGATCG-ACAAGACGGTTGTCGAA 3520 Query 518032 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 518091 |||||| || || | | |||| |||| || | | | |||| || | ||||||||| Sbjct 3521 ATCTTCTCCACCGAGATGGGTATCACCTGCTGTCGATTTCACTTCAAAGATTCCATCTTC 3580 Query 518092 AA--GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 || |||| | ||| |||||| || |||||||| | |||||| || || || ||| Sbjct 3581 AATCGAGAGGACGGAG--ACATCAAATGTACCACCACCGAGATCAAAGATGAGAACGTTC 3638 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 | || || | || || || | ||| || || | ||| || ||||| ||||| || Sbjct 3639 CTCTCAGTGCCGACCTTCTTGTCCAAACCGTAAGCGATAGCTGCGGCAGTGGGTTCGTTG 3698 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || |||||||| || || | ||||||||| |||||||||||||| |||||||| || Sbjct 3699 ATGATTCTCAACACGTTGATACCAGCAATGACACCTGCATCTTTAGTAGCTTGTCTCTGA 3758 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATA 518328 || || || || ||||| || || | || ||||| | || ||||| || | || Sbjct 3759 CTGTCATTGAAGTAGGCAGGGACGGTTACGACTGCATCTGACACAGTCTTT-CCGAGGTA 3817 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || | ||||| || | || | ||| || || | ||| ||| | | Sbjct 3818 GGCCTCAGCTGTCTCCTTCATCTTGATCAAGACCATGGAGCTGATCTCTTCAGGGAAGAA 3877 Query 518389 TTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448 | ||| ||| | || || | | | ||| | | | |||| ||| Sbjct 3878 CTCTTTGTCCTCACCCTTGTACTGGACGACGATCTTGGGTCTGGTGTCCTTGTTAACAAC 3937 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 | | |||||||| | |||||||| ||||||||| ||| | || | ||| || || Sbjct 3938 TCTGAATGGCCAATGCTTCATATCAGATTGAACATAGGAGTCGTCGAACTTTCTTCCGAT 3997 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 || || || ||||| || | || |||||||| || || || |||| | ||||| | Sbjct 3998 CAAACGCTTGGCATCGAAGACGGTGTTGGTTGGGTTCATGGCGACTTGGTTCTTGGCAGA 4057 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 || || |||| |||||| || || || ||| || |||||||| || | || || Sbjct 4058 GTCACCGATCAACCTTTCTGTATCGGTGAAACCAACGTACGATGGAGTGGTTCTGTTGCC 4117 Query 518629 TTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGT 518688 || || || ||||| ||||| || || |||| ||| | ||||| || || | || Sbjct 4118 CTGGTCGTTGGCAATGATTTCTACCTTGCCATGTTGGAAGACACCAACGCATGAGTAGGT 4177 Query 518689 TGTTCCTAAATCAATACCAATAGCA 518713 ||| || | |||||| || || ||| Sbjct 4178 TGTACCGAGATCAATTCCGATTGCA 4202 >seq4645 Length=15971 Score = 203 bits (224), Expect = 2e-46 Identities = 446/660 (68%), Gaps = 14/660 (2%) Strand=Plus/Minus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| ||||| ||||| ||||| | ||| | || |||||| | || | || | || Sbjct 5906 ATCGAAATCCTCACCACCCAAGTGAGTGTCACCATTTGTAGCTATAACCTCAAAGACACC 5847 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 | |||| | | || | |||||| || |||||||||| ||| |||| || | Sbjct 5846 GTTGTCAATTGTAAGGAGGGAGACATCAAAAGTACCACCACCCAAATCGAAAACGAGAAT 5787 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 |||| | ||| || | |||| || | || || || | ||| || ||||| ||||| Sbjct 5786 ATTCTTCTCTCCCTCCT---TTTTGTCTAAGCCGTAGGCGATAGCTGCTGCAGTAGGTTC 5730 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 |||||| ||||| | ||||| ||||||| |||| | || ||||| || || ||||| | Sbjct 5729 ATTAATGATTCTAAGGACATTGAGACCAGAAATTGTACCGGCATCCTTTGTAGCTTGACG 5670 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAA 518324 ||| | |||||||| || || || ||||| | ||| |||| ||| || |||||| |||| Sbjct 5669 TTGAGCGTCGTTAAAGTAGGCTGGGACAGTTACAACAGCATGAGTGACCTTCTTT-CCAA 5611 Query 518325 TATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG- 518383 || || || ||| ||||||||||| | || ||||| || |||| || ||| Sbjct 5610 GGTATGCTTCAGCGATTTCCTTCATTTTACTAAGAACCATTGCGGAGATTTCCTCAGGGG 5551 Query 518384 -GAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 518441 |||||| ||| ||| | || | ||||||| ||| || | || Sbjct 5550 CGAATAT--CTTTTTCTCACTGCCGACGCTA-ACTTCAATTGTTGGCTTTCCATTTTTAT 5494 Query 518442 TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 518501 ||| ||||| |||| | |||| ||| | ||| ||| ||| || | ||| || Sbjct 5493 CAATGACTTTGTATGGGAGATGCTTCAAATCAGCTTGGACAGTTTTATCGTCAAATGTTC 5434 Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 ||||||| | |||||| | ||||| | ||||| |||||| || ||||| || Sbjct 5433 TACCAATGATACGTTTTACGTCAAAGACTGTATTCTCTGGATTGGATGTCAATTGATTTT 5374 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCT---GTAAATGAAACATATGATGGAGTTG 518618 | || || || ||||| ||| |||| ||| || || | |||||||||||||| Sbjct 5373 TTGCAGCGTCACCAATGAGACGTTCACCTTCTAGGGTGAAAGCGACATATGATGGAGTGA 5314 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | |||||||| ||||| || |||||||||||||| |||| || | ||||| |||| Sbjct 5313 TACGATTACCCTGATCGTTGGCAATAATTTCAACACGACCACCTTTAAAGACACCGACAC 5254 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 |||| ||||| || | |||||||||||| ||||||||||| ||| |||| |||| | || Sbjct 5763 CTAAGCCGTAGGCGATAGCTGCTGCAGTAGGTTCATTAATGATTCTAAGGACATTGAGAC 5704 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | | |||| || | | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 5703 CAGAAATTGTACCGGCATCCTTTGTAGCTTGACGTTGAGCGTCGTTAAAGTAGGCTGGGA 5644 Query 322359 CAGTAATAACTGC 322371 |||| | ||| || Sbjct 5643 CAGTTACAACAGC 5631 >seq5879 Length=52658 Score = 104 bits (114), Expect = 2e-16 Identities = 206/308 (67%), Gaps = 18/308 (6%) Strand=Plus/Plus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 |||||||||||| || ||||| | || | || || | ||||| |||| | | Sbjct 26825 ATCAAAATCTTCTCCGCCCAAATGCGTGTCACCACTAGTTGAGACTACTTCAAAAACTTC 26884 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || |||| | ||| || | |||||| || || ||||||| ||| |||| ||| | Sbjct 26885 TTCGTCAATGGCCAAGAGGGAGACATCAAAAGTACCGCCACCCAGATCGAAAACAAGGAT 26944 Query 518146 ATTCATTTCTTTGTC-------TTGGTTT-----------TTATCAAGACCATACGCAAA 518187 | | |||| || | ||||| | || ||||| ||||| || | Sbjct 26945 CTGCTTTTCCTTAGCCTTTCCATTGGTATCTCTAACCTTCTTGTCAAGGCCATAGGCGAT 27004 Query 518188 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 518247 |||||| || || || ||||| |||||||| | | ||| ||||||||||| |||| || Sbjct 27005 AGCAGCTGCTGTGGGCTCATTGATAATTCTAAGGATATTTAGACCAGCAATCTTTCCAGC 27064 Query 518248 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 |||||||| |||||||| | || ||||| || || || || || | |||||||| Sbjct 27065 GGTCTTAGTGGCCTGTCTTTGGGCGTCATTAAAGTAGGCTGGGACTGTTACAACGGCATG 27124 Query 518308 AGTTACTT 518315 || |||| Sbjct 27125 GGTGACTT 27132 >seq3340 Length=33557 Score = 93.3 bits (102), Expect = 3e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||||| | || || || || || || |||| ||| ||||| ||||||||||| |||| | Sbjct 25952 TTGTCGTCATTCTTCTCTAGGCCGTAGGCAAGAGCGGCAGCTGTTGGTTCATTTATAACT 25893 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 || | ||| | || || |||||| || ||||||||||| || || | || ||| Sbjct 25892 CTAAGAACCTCGAGGCCTGCAATTTGACCGGCATCTTTAGTCGCCTGGCGCTGGCTGTCG 25833 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||||| || || || ||||| | |||||||| Sbjct 25832 TTAAAGTAAGCTGGGACAGTGACAACGGCAT 25802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780520938488950