Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq944 158 2e-33 seq3112 122 1e-22 seq976 95.1 2e-14 >seq944 Length=39427 Score = 158 bits (174), Expect = 2e-33 Identities = 411/616 (67%), Gaps = 12/616 (2%) Strand=Plus/Plus Query 15727 ACTCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATAC 15786 ||||||| ||||||||| |||| ||||| ||||| || || |||| |||||||| Sbjct 21715 ACTCATTGAGGAGATTTCCGAGCTCAGCACCAGAAAATCCGATCGTGATACCAGCGATAC 21774 Query 15787 TCCCCAACTTGACATCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTTCT 15846 || | ||||||| ||||| || ||| | || || || | | |||||| | Sbjct 21775 GATCCCATCTGACATCATCAGCAAAAGGCTTTCCTTTGGCATGGACTTCGAGGATCTTTT 21834 Query 15847 CGCG-TCCCCGAACACTTGGGAGAGCTACTTGG-ATCTTACGATCAAAGCGACCTGGGCG 15904 || || ||| |||| || | | | | ||| |||||||| || ||||| || Sbjct 21835 TACGATCTTCGAGAG--TGGGTAAGTTGATCGTCACCTTGCGATCAAATCGTCCTGGTCG 21892 Query 15905 AAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT 15964 || || || ||| |||| |||| | ||||| || || || |||| | | | || Sbjct 21893 GAGTAGGGCACTATCGAGGACATCAGCACGATTGGTCGCTGCCATGATGATCACATTGGT 21952 Query 15965 TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATC 16024 || || ||||| ||||||||||| || | | ||| || | ||| ||||| || ||||| Sbjct 21953 CTCATTGTCAAATCCATCCATCTCCGTGAGTATCTGATTGAGAGTCTGTTCTCGCTCATC 22012 Query 16025 AT-TC--GCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAAT 16081 || || || |||||| || | || | || || | ||||| ||||| || || Sbjct 22013 ATGTCCACCTCCGATACCA--GGCGAT-CGCTTTTTCCCTATAGCATCGATCTCGTCGAT 22069 Query 16082 GAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGC 16141 || | ||| |||| || ||| ||||| | ||||||||| || ||||| || Sbjct 22070 AAATATGATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGATCTCGGACACGAGCAGC 22129 Query 16142 GCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACAT 16200 |||||||| ||||||||||| ||||| | | | | | || | || || || || | Sbjct 22130 ACCCACACCGACAAACATCTCGACAAACTCAGATCCAG-ATATAGAGAAAAATGGTACTT 22188 Query 16201 TAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGA 16260 | || || || | |||| |||||| ||||||||||| || ||||| ||| | | Sbjct 22189 CACTCTCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGTTCCTGGAGGTCCCACCA 22248 Query 16261 GGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAA 16320 ||| ||||||||| |||||||| | | | |||| | ||| | ||| |||| Sbjct 22249 TCAGGATACCTCGTGGGATCTTGGCTCAGAGTTCTTTGTATTTTGTAGGATTCTTGAGAA 22308 Query 16321 AATCCACAATCTCTTC 16336 | || |||| ||||| Sbjct 22309 AGTCGACAACTTCTTC 22324 >seq3112 Length=23135 Score = 122 bits (134), Expect = 1e-22 Identities = 331/501 (66%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAG 102182 |||||||| |||||||| | || ||| | |||| || || |||| | ||| Sbjct 5296 AAGAAAGCCGATTGGGCCCTCAAATGGATCTCGGATATGAACTCAAA---CTTTTCCGAG 5352 Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || || | || ||| | || ||||| || ||||||||||| |||||| || || Sbjct 5353 CGGCTAGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAGCGATA 5412 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | ||| | ||||| || || ||| |||| |||||| ||| ||| ||||| |||||| Sbjct 5413 TTCTGGATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCATCTCT 5472 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 102362 || || || || || || || ||||| || || ||| || | ||| Sbjct 5473 CGCGATGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAACACATGAAGAACAAA 5532 Query 102363 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTC 102422 || || | | | ||| || ||| ||||| || ||||| ||| |||| Sbjct 5533 CCTACCGTGGCCAAAGTGCATGAAATCGTTGCCGAAGCTGTGCTCATTGAACAGGAATTC 5592 Query 102423 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAA--GATGTCCGAAT 102480 || ||||||||||| || ||| || || ||||| ||| || ||||| | | Sbjct 5593 CTACGCGATGCCCTTCCTTGTAGTCTGATTGGAATGAA--CTGCAAGTTGATGTGTCAGT 5650 Query 102481 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAAT-TTGGAAC 102539 | ||||| | ||| | ||| | || || | || | | ||||| | | ||||||| Sbjct 5651 ACATTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCT-GTCGTGCCCAAAGTATTGGAAC 5709 Query 102540 TCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTC 102599 || | ||| || |||||||| |||||||| ||| || || ||||| |||||||| ||| Sbjct 5710 TCTACGAACCCCTTTGACTTTATGGAGAATATTTCACTGGAAGGGAAAACAAACTTTTTC 5769 Query 102600 GAAAAGAGGGTTGGGGACTAT 102620 |||| | |||||||||||| Sbjct 5770 GAAAGACGTGTTGGGGACTAT 5790 >seq976 Length=29826 Score = 95.1 bits (104), Expect = 2e-14 Identities = 607/961 (63%), Gaps = 37/961 (4%) Strand=Plus/Plus Query 111703 TGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCA 111762 |||||| ||||| | || |||||||| ||| | || || || || |||||||||| Sbjct 22402 TGTTCACTCACGCGTCTCCCACCCTCTTTAACTCGGGCACTCCGCAGCCACAAATGTCCA 22461 Query 111763 GTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822 |||| ||||| || ||| || || ||| || | ||||| |||| ||||||| Sbjct 22462 GTTGCTTCCTCCTTACAATGAATGATGATAGTATTGAAGGCATATACGAGACTCTCAAAC 22521 Query 111823 AATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAG 111882 ||||||||| ||||| || ||||||||||| || | | || | | | | Sbjct 22522 AATGTGCCCTTATCTCTAAAAATGCTGGTGGTATTGGCCTCAGTGTGCACACTATTCGCG 22581 Query 111883 CCAACAAGTCTCGT--ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCT 111940 | | | | | ||| ||| || |||||| |||| |||| || ||||| ||||| Sbjct 22582 GC--TCTGGCGCATACATTTCAGGAACGAATGGTGAATCGAATGGCATCATTCCCATGCT 22639 Query 111941 TCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG------GG 111994 | || ||||| ||| || || ||||| ||||| || || ||| || Sbjct 22640 CAGAGTCTTTAATAACACCGCTCGTTATGTTGACCAA---GGAGGTAATAAGAGACCTGG 22696 Query 111995 ATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCG 112054 | || | || | ||||| || |||||||| |||| || | || | ||| || | Sbjct 22697 AGCTTTTGCCATTTATCTCGAACCATGGCATCCGGACATTTTCTCCTTTGTCGAGATGAG 22756 Query 112055 TCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCC 112114 || |||| || || | | | || || ||||||| || || ||||| || Sbjct 22757 AAAAAATACTGGTGCAGAAGAAGTGAGAGCTCGTGACCTCTTCTATGCCCTTTGGATACC 22816 Query 112115 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CA 112173 |||| | |||||| || | || ||| || || | ||| | | | ||| | | Sbjct 22817 AGATTTATTCATGGAGCGTGTCGAGAAGGATGAGGAATGGACATTGATGGACCCAAATGA 22876 Query 112174 AGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACG 112233 | || || || || | ||| | ||| |||| | | ||||| | || | Sbjct 22877 ATGC-CCGGGACTGGCAGATTGCTGGGGACCAAAGTTCAATGAACTCTATCTTCAATATG 22935 Query 112234 AGGAA-GAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTC 112292 | ||| |||| |||| | | ||| | ||| || ||||| | || ||| | Sbjct 22936 AAGAACAAAAGAAGGGCAAGAG-GACACTCAAGGCTCGGGAGTTGTGGTACGCAATTGTT 22994 Query 112293 AAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAG 112352 | | |||| ||| ||||||| ||||| | || |||||||| |||||||| |||| Sbjct 22995 GATGCACAAATCGAAACTGGTAATCCATACGTTCTCTACAAAGATGCCTGTAATTCAAAG 23054 Query 112353 AGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAA 112412 ||||| | ||||||| || ||||| || || || |||||||| | ||| Sbjct 23055 TCGAATCAGCAACATTTGGGGACCATTCGTAGTTCTAATCTGTGCACAGAAATTGTAGAA 23114 Query 112413 TTTACAG-ACA-AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT 112470 ||||| || ||||||| || || || ||||| || |||||| | || || | Sbjct 23115 --TACAGTTCACCTGATGAGATTGCAGTCTGCAACCTGGCCTCAATCTCCCTTCCAGCCT 23172 Query 112471 ATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAG-TTACGAAAACT 112529 ||| | |||| |||| || || | |||||| || | | | || | ||| Sbjct 23173 TTGTCAGTGCAGATGGCAAGAGTTTCGACTTTGAAAAGCT-AAGGTTGATTGCCAAAGTC 23231 Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTG-CTC- 112587 |||| || || ||||||| |||||||||| || ||||| || |||| ||| Sbjct 23232 ATCACCAAGAATCTAAACAAGGTTATTGATATCAACTTTTATCC-------ACTGCCTCA 23284 Query 112588 --GTAAA---TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA 112642 |||| || |||||| | || | |||||||| |||| | |||||||| || || Sbjct 23285 AGCTAAACTCTCCAATATGCGCCATAGACCAATTGGAATCGGCATACAAGGTCTAGCAGA 23344 Query 112643 T 112643 | Sbjct 23345 T 23345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620695262374000