Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3112 136 5e-27 seq944 134 2e-26 >seq3112 Length=23135 Score = 136 bits (150), Expect = 5e-27 Identities = 330/494 (67%), Gaps = 7/494 (1%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 |||||| || || | ||||||| || || || || || || ||||| || || ||||| Sbjct 5790 ATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCTCCAT 5731 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCA-ACTTGTTTCAGAAGAC 119325 ||||||||| || || | |||||||| || | | || | | | ||| |||| Sbjct 5730 AAAGTCAAAGGGGTTCGTAGAGTTCCA-ATACTTTGGGCACGACAGCTCCACCAGCAGAC 5672 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||||| ||| | || || || | ||||| | | ||||| || || ||| ||| Sbjct 5671 GATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGACTAC 5612 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | || || |||||| | | ||| | || || || ||||||||| ||||| | Sbjct 5611 AAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGATTTCAT 5552 Query 119446 GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTT 119505 | | | | | |||||||| ||| | ||||||| | |||||| || Sbjct 5551 GCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAGAGGAGACAGGCAAAGTCGG 5492 Query 119506 GATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTC 119565 ||| || |||||||| ||||||||||||||||| || ||| || || |||| ||||| Sbjct 5491 TATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGCAAGAGTC 5432 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 | | |||||| | ||| || || || || ||||| ||||| |||||||| || Sbjct 5431 CACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCCTCTACGG 5372 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGA 119681 || || || | ||| ||||| | ||||| | ||| | | || || ||| ||||| Sbjct 5371 CGGAAAAGGCCACTAGCCGCTC-GGAAAAGTTTGAGTTCATATCCGAGATCCATTTGAGG 5313 Query 119682 GCCCAGTTGGCCTT 119695 ||||| | ||| || Sbjct 5312 GCCCAATCGGCTTT 5299 >seq944 Length=39427 Score = 134 bits (148), Expect = 2e-26 Identities = 321/476 (67%), Gaps = 16/476 (3%) Strand=Plus/Plus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 ||| ||||| || || ||||| |||||||| ||| ||| || | ||| |||| || || Sbjct 21869 CTTGCGATCAAATCGTCCTGGTCGGAGTAGGGCACTATCGAGGACATCAGCACGATTGGT 21928 Query 11559 AGCGGCAATGACTA---CAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 || || |||| | || || ||||||||||| || || ||||| || ||||| | Sbjct 21929 CGCTGCCATGATGATCACATTG---GTCTCATTGTCAAATCCATCCATCTCCGTGAGTAT 21985 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGT-TGGAGGGC--ATACCACCTGCCGAACGCTT 11672 ||| |||| |||||||| |||||||| | | | | |||||| | ||| ||||| Sbjct 21986 CTGATTGAGAGTCTGTTCTCGCTCATCATGTCCACCTCCGATACCA---GGCGATCGCTT 22042 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 || || | ||| || ||||| ||||| |||| ||| | || | |||| |||| Sbjct 22043 TTTCCCTATAGCATCGATCTCGTCGATAAATATGATCGATGGAGCATGTTCACGAGCCT- 22101 Query 11733 TTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 ||||| || || || ||||| || || ||||| || |||||||| || || | | Sbjct 22102 CACGAAAGAGATCTCGGACACGAGCAGCACCCACACCGACAAACATCTCGACAAACTCAG 22161 Query 11792 CGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 |||| | | ||| || || || | | ||| || |||| |||| ||||| ||| Sbjct 22162 ATCCAGATATAGAGAA-AAATGGTACTTCACTCTCTCCTGCGACTGCTCTGGCGAGTAGA 22220 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTT 11910 |||||||| || || || | || | | ||| || || ||||||||||| | | Sbjct 22221 GTCTTACCAGTTCCTGGAGGTCCCACCATCAGGATACCTCGTGGGATCTTGGCTCAGAGT 22280 Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTT 11966 | ||| ||| |||||||| ||||| |||| || || || || |||| Sbjct 22281 TCTTTGTATTTTGTAGGATTCTTGAGAAAGTCGACAACTTCTTCGAGATCTGCCTT 22336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588931274635000