Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq944 138 1e-27 seq27 96.9 4e-15 seq3112 93.3 5e-14 >seq944 Length=39427 Score = 138 bits (152), Expect = 1e-27 Identities = 410/618 (66%), Gaps = 16/618 (3%) Strand=Plus/Plus Query 9034 ACTCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATAC 9093 ||||||| ||||||||| |||| ||||| ||||| || || |||| |||||||| Sbjct 21715 ACTCATTGAGGAGATTTCCGAGCTCAGCACCAGAAAATCCGATCGTGATACCAGCGATAC 21774 Query 9094 --TCCTCAACTTGACATCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTT 9151 ||| || || |||||| ||||| || ||| | || || || | | |||||| Sbjct 21775 GATCC-CATCT-GACATCATCAGCAAAAGGCTTTCCTTTGGCATGGACTTCGAGGATCTT 21832 Query 9152 CTCGCG-TCCCCGAACACTTGGGAGAGCTACTTGG-ATCTTACGATCAAAGCGACCTGGA 9209 | || || ||| |||| || | | | | ||| |||||||| || ||||| Sbjct 21833 TTTACGATCTTCGAGAG--TGGGTAAGTTGATCGTCACCTTGCGATCAAATCGTCCTGGT 21890 Query 9210 CGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCT 9269 || || || || ||| |||| |||| | ||||| ||||| || |||| | | | Sbjct 21891 CGGAGTAGGGCACTATCGAGGACATCAGCACGATTGGTCGCTGCCATGATGATCACATTG 21950 Query 9270 GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCA 9329 || ||||| ||||| ||||||||||| || | | || || | ||| ||||| || ||| Sbjct 21951 GTCTCATTGTCAAATCCATCCATCTCCGTGAGTATCTGATTGAGAGTCTGTTCTCGCTCA 22010 Query 9330 TCAT-TC--GCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9386 |||| || || |||||| || | || | || || | ||||| ||||| || Sbjct 22011 TCATGTCCACCTCCGATACCA--GGCGAT-CGCTTTTTCCCTATAGCATCGATCTCGTCG 22067 Query 9387 ATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTG 9446 || || | || |||| || ||| || || ||||||||| || || | Sbjct 22068 ATAAATATGATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGATCTCGGACACGAGCA 22127 Query 9447 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGAC 9505 || |||||||| ||||||||||| ||||| | | | | | || | || || || || Sbjct 22128 GCACCCACACCGACAAACATCTCGACAAACTCAGATCCAG-ATATAGAGAAAAATGGTAC 22186 Query 9506 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGC 9565 | | || || || | |||| |||||| ||||||||||| || ||||| ||| | Sbjct 22187 TTCACTCTCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGTTCCTGGAGGTCCCAC 22246 Query 9566 GAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAG 9625 | ||| ||| ||||| |||||||| | | | |||| | ||| | |||||| Sbjct 22247 CATCAGGATACCTCGTGGGATCTTGGCTCAGAGTTCTTTGTATTTTGTAGGATTCTTGAG 22306 Query 9626 AAAATCCACAATCTCTTC 9643 ||| || |||| ||||| Sbjct 22307 AAAGTCGACAACTTCTTC 22324 >seq27 Length=31178 Score = 96.9 bits (106), Expect = 4e-15 Identities = 261/392 (67%), Gaps = 13/392 (3%) Strand=Plus/Plus Query 169139 CTTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGA 169198 |||||| ||| | ||||||||| | || || | |||| | |||||||| || || || Sbjct 6963 CTTGAGGAGATTCGGCCAGAAGCAATGAATAAAGTTTATCAGTAGACCCTTAATATGGGA 7022 Query 169199 ACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAG----TTCAGAAA 169254 ||| || | ||| ||||||||| ||||||| || || | || || || | Sbjct 7023 ACCGTCCTGATCCTGATCTGTCATGATCATAATCTTGCCGTACCTGAGAGTCTTGAGGGA 7082 Query 169255 CATCTTG---GTAGTCTTT-TCCTTGT--TGAAGACCCAAGATCTTCTTGAGATCGTTGA 169308 | || | || || ||| | ||| || || || | ||||| ||| |||| | Sbjct 7083 C-TCAGGAGTGTCGTATTTATTCTTCACCTGCAGCCCGAGAATCTTGATGATGGCGTTCA 7141 Query 169309 ACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACA-CTTCCCA 169367 || |||| | || ||| | ||| ||||||||||| ||| ||| || || Sbjct 7142 CTTCAAGGTTGTCAGCGACCTGCTTTATTGACGCGTCGCGGACGTTC-AACATTTTACCC 7200 Query 169368 CGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGG 169427 | | |||||||| || ||| | ||||| || | || ||| || || ||||| | | Sbjct 7201 CTCAAGGGAAAGACACCGTAGAGGTCACGACCGATAACACCGAGGCCAGCTACCGCCAAG 7260 Query 169428 GTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTACCC 169487 ||||| ||||| || |||||||||| |||||| || |||||| || | | |||| Sbjct 7261 GTTTTGGCTGAGTCTCCCTCCGTGAGAATGAGAGTGCACTTTTGGGAGTTCTTACTACCA 7320 Query 169488 GCCTTGTTTGCGTCGTCCAACTTGGGAATACC 169519 || | ||| ||||| || | ||| ||||| || Sbjct 7321 GCATCGTTGGCGTCATCTAGCTTTGGAATGCC 7352 >seq3112 Length=23135 Score = 93.3 bits (102), Expect = 5e-14 Identities = 291/446 (65%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 |||||||||||| || | || || ||||| || ||||| || || ||| || ||||| Sbjct 5790 ATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCTCCAT 5731 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 ||||||||| || ||| | | ||||||| | ||||| || | | || |||| Sbjct 5730 AAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGACAGC-TCCACCAGCAGAC 5672 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 |||| | |||| | |||||||||| ||||| || ||||||| || || ||| ||| Sbjct 5671 GATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGACTAC 5612 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | || || || || | ||| | | ||||| || || || ||||| | | Sbjct 5611 AAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGATTTCAT 5552 Query 117224 GGATAGTTTCGGTA--GTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | ||| | | || ||| | || || || ||||| |||||| || Sbjct 5551 G--CACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAGAGGAGACAGGCAAAGTC 5494 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 || || || ||||| || || || || ||||| ||| || || |||| ||| Sbjct 5493 GGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGCAAGAG 5434 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || || ||||||| ||| | || || ||| ||||| |||||||| || ||||| || Sbjct 5433 TCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCCTCTAC 5374 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGG 117427 | ||| || | || ||||||| Sbjct 5373 GGCGGAAAAGGCCACTAGCCGCTCGG 5348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589935998333000