Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5171 158 3e-33 seq1961 150 4e-31 >seq5171 Length=25613 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || || ||||| || ||||| ||||||||||||||||| | ||||| Sbjct 8024 TCTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGT 8083 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || || || || |||||||| | ||| || || ||||||||||| || Sbjct 8084 TCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACC 8143 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||||||| || ||||| ||||| || ||||| || || || || || Sbjct 8144 TTCCTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAG 8203 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | |||||| || || | ||||| Sbjct 8204 GGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCAT 8245 >seq1961 Length=16662 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | |||||||||||||| ||||| || ||||| |||| |||||| Sbjct 7711 TCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 7770 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| || |||||||| ||||| || ||||| || || || Sbjct 7771 TCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACC 7830 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 || ||||||||||| || ||||||||||| || | ||| ||| || || || Sbjct 7831 CTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTC---GCTTGGCTCGACCTC 7887 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||||||| || | ||||| Sbjct 7888 TAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109395242459525