Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1961 118 7e-22 seq5171 104 2e-17 >seq1961 Length=16662 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| || || || ||||| ||||| ||||| ||| | | || ||| Sbjct 7724 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTTCCGTCTTCC 7783 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || ||||| || || |||||||| ||| | || | ||||||||||| | Sbjct 7784 AATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCCTTGTCTTGA 7843 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | ||||| || | | ||| || || | |||||||| || Sbjct 7844 ATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGTTATGGTCTTA 7903 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| || ||||||||||||||| Sbjct 7904 CCAGTAAGAGTTTTTACAAAGATCTGCATA 7933 >seq5171 Length=25613 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| || || || || || ||| |||| || || ||||||||||| || Sbjct 8055 TCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAG 8114 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| ||| ||||| ||| | || | || ||||| || |||||| |||||| || Sbjct 8115 ATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTGGCTTTGAC--AT 8172 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| ||| || |||||| |||| ||| || ||||| || || ||||| || | Sbjct 8173 TCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGTAAGAGTTTTGA 8232 Query 34969 CAAAGATCTGCAT 34981 |||| |||||||| Sbjct 8233 CAAAAATCTGCAT 8245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324609564432600