Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq976 192 7e-44 seq3112 105 8e-18 >seq976 Length=29826 Score = 192 bits (212), Expect = 7e-44 Identities = 449/666 (67%), Gaps = 20/666 (3%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || || |||||||| || |||||||| ||| |||||||| || | || | ||| Sbjct 22885 CCCGGGCATTCATTTGGGTCCATCAATGTCCATTCCTCATCCTTCTCGACACGCTCCATG 22826 Query 48216 AATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 |||| ||||||||||||||| || ||| || | || | || ||| | |||||| || Sbjct 22825 AATAAATCTGGTATCCAAAGGGC-ATAGAAGAGGTCACGAGCTCTCACTTCTTCTGCACC 22767 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 | |||| || | | || | |||| | || || | |||||||||||| | ||| || Sbjct 22766 AGTATTTTTTCTCATCTCGACAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATAAAT 22707 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | | || |||| |||||||||||||| || | ||| | || || || ||| | Sbjct 22706 GGCAAAAGCTCCAGGTCTCTTATTACCTCCTTGGTCAACATAACGAGCGGTGTTATTAAA 22647 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 ||||| | ||| || | || ||||| ||| |||||| ||||| ||||| || || Sbjct 22646 GACTCTGAGCATGGGAATGATGCCATTCGATTCACCATTCGTTCCTGAAATGTATGCGCC 22587 Query 48455 ACTAGCTCTTATA--TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGA 48512 | | | ||| | | | || | || |||||||| || ||||||| || || Sbjct 22586 AGAGCCGCGAATAGTGTGCACACTG--AGGCCAATACCACCAGCATTTTTAGAGATAAGG 22529 Query 48513 GCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGA 48572 ||||| |||| || || || || || ||||| ||||||||||| |||| | | || Sbjct 22528 GCACATTGTTTGAGAGTCTCGTATATGCCTTCAATACTATCATCATTCATTGTAAGGAGG 22469 Query 48573 AAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 || ||||| |||||||| || || ||| || || ||||| | || ||||| || ||| Sbjct 22468 AAGCAACTGGACATTTGTGGCTGCGGAGTGCCCGAGTTAAAGAGGGTGGGAGACGCGTGA 22409 Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGT--TTCAA--TAACAGAATCTATATCCCA 48688 | ||| | || || || | | || || || || || | | || | ||||| | Sbjct 22408 GTGAACAACTTTTCAGACATATACTTGTAGGTCATTAAAGCTTCCTCAA-CATTATCCAA 22350 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTT--T 48745 ||| || || | ||| || | |||||| | | ||||| || ||| || || Sbjct 22349 ---ATGGATGCCAAGAGAAACTCTCATTAATAGGTGCTGAGGCCTCTCATACGTCTTGCC 22293 Query 48746 GTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGA 48805 ||||| | | || || ||||| ||||| | || || || || |||||||||||| Sbjct 22292 GTTATATCTCTT---GAGGTATGACTTTTCTAGGGTCTTGAATCCGAAATAGTTGTATTC 22236 Query 48806 AAAGTC 48811 |||||| Sbjct 22235 AAAGTC 22230 >seq3112 Length=23135 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || |||| || | ||||||||| ||||||||||| ||||| || ||||| || ||| Sbjct 5157 TCAATCAGTAGAGAGTACATTTCCGAATGAATATTCTCTATTGCAATCTGGAAGGAGTAG 5098 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 || ||| ||||| | |||| || || || || ||||| || | |||||| Sbjct 5097 AAGGCTCTGGCTTCGGGAATCTTGACCTCTTGGCAGAACCTTTCCACGAGATTTTCGAGG 5038 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCA 19416 || ||||| || ||||| || || || || | ||||| | ||| | ||| |||| Sbjct 5037 ACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGCACATGCGAGAGAAAGTGGCGTTCTTCA 4978 Query 19417 TCTGAGGTTAATGT-ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475 ||| || | || | ||||| || | ||||| |||| || || |||||||| || Sbjct 4977 TCT----TTGAGGTCCTGCCAATGCTTGAGGTCTTTCGATATGTCAACCTCTTCAACAGT 4922 Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATA 19502 ||||||||| || | || |||||||| Sbjct 4921 CCAAAAAGAGGCGACAGCCTTTTTATA 4895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562066114863000