Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5171 176 4e-38 seq4645 168 5e-36 seq2654 134 1e-25 seq774 134 1e-25 seq2310 131 1e-24 seq5879 91.5 1e-12 seq1961 87.8 1e-11 seq3340 86.0 5e-11 >seq5171 Length=25613 Score = 176 bits (194), Expect = 4e-38 Identities = 174/223 (78%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || || | ||| || ||||||||||| ||| |||| |||||||||||||| ||||| Sbjct 8025 CTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTG--AATATTGTAATCAGATAGAG 8082 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 |||| ||||||||||||||||||||| || || | || |||||||| |||||||| | Sbjct 8083 TTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATAC 8142 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| ||||||||||| || ||| || ||| || || |||| | | | |||| Sbjct 8143 CTTCCTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGA 8202 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||| ||||||||||||||||||||| || ||||| ||||| Sbjct 8203 GGGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCAT 8245 >seq4645 Length=15971 Score = 168 bits (186), Expect = 5e-36 Identities = 339/496 (68%), Gaps = 9/496 (2%) Strand=Plus/Plus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||| ||||| | || |||| ||||||||||||||||| ||||| ||||| | | Sbjct 5254 GTGTCGGTGTCTTTAAAGGTGGTCGTGTTGAAATTATTGCCAACGATCAGGGTAATCGTA 5313 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 |||||||| ||||| ||||||| ||| ||||| | | ||||||| || |||| Sbjct 5314 TCACTCCATCATATGTCGCTTTCACCCTAGAAGGTGAACGTCTCATTGGTGACGCTGCAA 5373 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || ||||| || ||||| ||||| | ||||| | |||||| | ||||| | Sbjct 5374 AAAATCAATTGACATCCAATCCAGAGAATACAGTCTTTGACGTAAAACGTATCATTGGTA 5433 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 ||| ||| | ||| ||||| || || ||| |||||||| || | | || | || Sbjct 5434 GAACATTTGACGATAAAACTGTCCAAGCTGATTTGAAGCATCTCCCATACAAAGTCATTG 5493 Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTA-CTCATGAAGGATCTGTTAAACA-ATTTTC 550320 || |||||| || ||||||| || | | || | | ||| | ||| | Sbjct 5494 ATAAAAATGGAAAGCCAACAATTGAAGTTAGCGTCGGCAG--TGAGAAAAAGATATTCGC 5551 Query 550321 ACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGT 550380 || || |||| || | |||||| | | |||||||| ||| || || | | Sbjct 5552 CCCTGAGGAAATCTCCGCAATGGTTCTTAGTAAAATGAAGGAAATCGCTGAAGCATACCT 5611 Query 550381 TGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 ||| ||||| || || |||| || ||||||| ||||| || ||||| ||| | |||| Sbjct 5612 TGG-AAAGAAGGTCACTCATGCTGTTGTAACTGTCCCAGCCTACTTTAACGACGCTCAAC 5670 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||||||||| || ||||| || ||| |||| || ||||| ||| | || || |||| Sbjct 5671 GTCAAGCTACAAAGGATGCCGGTACAATTTCTGGTCTCAATGTCCTTAGAATCATTAATG 5730 Query 550500 AACCTACTGCTGCTGC 550515 |||||||||| || || Sbjct 5731 AACCTACTGCAGCAGC 5746 >seq2654 Length=8103 Score = 134 bits (148), Expect = 1e-25 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || || || || |||||||| | ||| |||| || Sbjct 317 GCAATCGGAATTGATCTCGGTACAACCTACTCATGCGTTGGTGTCTTCCAACATGGCAAG 258 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| |||||||| || || || |||||||| |||||||| || ||| |||||| Sbjct 257 GTAGAAATCATTGCCAACGACCAGGGCAACAGAACCACTCCATCGTACGTTGGTTTCACC 198 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || ||| || | ||||| | || || | |||| | | || || ||||| Sbjct 197 GATACAGAAAGGTTGATCGGTGACTCTGCCAAGAACCAAGTCGCCATGAACCCAACCAAC 138 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| || ||||| || ||||||| || | || || ||||||| | Sbjct 137 ACCGTCTTCGATGCCAAGCGTTTGATCGGAAGAAAGTTCGACGACTCCTCTGTTCAATCT 78 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAA 550263 ||||||||||||||||| ||| | ||||||| Sbjct 77 GATATGAAGCATTGGCCATTCAGAGTTGTTAA 46 >seq774 Length=16834 Score = 134 bits (148), Expect = 1e-25 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || || || || |||||||| | ||| |||| || Sbjct 298 GCAATCGGAATTGATCTCGGTACAACCTACTCATGCGTTGGTGTCTTCCAACATGGCAAG 239 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| |||||||| || || || |||||||| |||||||| || ||| |||||| Sbjct 238 GTAGAAATCATTGCCAACGACCAGGGCAACAGAACCACTCCATCGTACGTTGGTTTCACC 179 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || ||| || | ||||| | || || | |||| | | || || ||||| Sbjct 178 GATACAGAAAGGTTGATCGGTGACTCTGCCAAGAACCAAGTCGCCATGAACCCAACCAAC 119 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| || ||||| || ||||||| || | || || ||||||| | Sbjct 118 ACCGTCTTCGATGCCAAGCGTTTGATCGGAAGAAAGTTCGACGACTCCTCTGTTCAATCT 59 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAA 550263 ||||||||||||||||| ||| | ||||||| Sbjct 58 GATATGAAGCATTGGCCATTCAGAGTTGTTAA 27 >seq2310 Length=6049 Score = 131 bits (144), Expect = 1e-24 Identities = 351/532 (66%), Gaps = 16/532 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || || || || |||||||| | ||| |||| || Sbjct 4201 GCAATCGGAATTGATCTCGGTACAACCTACTCATGCGTTGGTGTCTTCCAACATGGCAAG 4142 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| |||||||| || || || |||||||| |||||||| || ||| |||||| Sbjct 4141 GTAGAAATCATTGCCAACGACCAGGGCAACAGAACCACTCCATCGTACGTTGGTTTCACC 4082 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || ||| || | ||||| | || || | |||| | | || || ||||| Sbjct 4081 GATACAGAAAGGTTGATCGGTGACTCTGCCAAGAACCAAGTCGCCATGAACCCAACCAAC 4022 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| || ||||| || ||||||| || | || || |||||| | Sbjct 4021 ACCGTCTTCGATGCCAAGCGTTTGATCGGAAGAAAGTTCGACGACTCCTATGTTCAATCT 3962 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| ||| | ||||||| | | | ||| | | ||| | Sbjct 3961 GATATGAAGCATTGGCCATTCAGAGTTGTTAA-----CAAGGACACC--AGACCCAAGAT 3909 Query 550292 ACTCAT------GAAGGAT-CTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 || | |||| | | ||| | || | || ||| | || || ||||| Sbjct 3908 CGTCGTCCAGTACAAGGGTGAGGACAAAGAGTTCTTCCCTGAAGAGATCAGCTCCATGGT 3849 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAG 550403 || || || ||||| | ||||| || | | || |||| || | ||||||| Sbjct 3848 CTTGATCAAGATGAAGGAGACAGCTGAGGCCTACCTCGG-AAAGACTGTGTCAGATGCAG 3790 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | |||| || || || || || |||||| || | ||||||||||||||||| || Sbjct 3789 TCGTAACCGTCCCTGCCTACTTCAATGACAGTCAGAGACAAGCTACTAAAGATGCAGGTG 3730 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 |||||||| | || || | | || ||||| ||||| ||||| || || Sbjct 3729 TCATTGCTGGTATCAACGTGTTGAGAATCATCAACGAACCCACTGCCGCAGC 3678 Score = 100 bits (110), Expect = 2e-15 Identities = 450/699 (64%), Gaps = 18/699 (3%) Strand=Plus/Minus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 || ||||| ||||| |||||||| | | ||||| || | |||||| ||| ||| || Sbjct 3427 AGGACTGCCTGCGAGAGAGCCAAGAGGACCCTTTCCTCCAGCACTCAAGCCAGTATCGAG 3368 Query 551970 GTAGATTCATTATTTGAGGGAATTGA-TTATA-ATACGCCTATTTCGAGGGCCAAATTTG 552027 | || || | | ||| || |||| || || | | || || | || || || | Sbjct 3367 ATTGACTCTCTCTATGACGGTGTTGACTTCTACACAAGC--ATCACCAGAGCTCGTTTCG 3310 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT-TTAAGA 552086 |||| || || || || | || | ||| | || ||||| ||| |||| || ||| Sbjct 3309 AAGAGATGTGCTCGGACTTGTTCCGTGGTACATTGGACCCAGTCGAA-AAGTCCTTGAGA 3251 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | || || || || |||| | || || |||||| | || || || || || | Sbjct 3250 GATGCCAACATGGACAAGGCCAAGATCCACGACATTGTGTTGGTCGGAGGTTCAACTCGT 3191 Query 552147 ATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 ||||| || |||| | | | ||| ||| || ||| || | | | | || || Sbjct 3190 ATTCCAAAGATTCAGAAGCTTCTGCAAGA-CTTCTT-CAACGGAAGAGAGCTCAAC--AA 3135 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | ||||| ||||| ||||| |||||||||||||| | || ||||| || || Sbjct 3134 GTCGATCAATCCTGATGAAGCTGTAGCCTATGGTGCCGCTGTCCAGGCAGCCATCCTCAA 3075 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| | | | || | ||| | || |||| | ||||| |||| || || | Sbjct 3074 GGGAGACAAGCACGACATCCTAGACC---TTCTACTACTCGATGTCGCTCCACTCTCATT 3018 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | || || | ||| ||| | |||||| || ||| | || || |||| ||||| Sbjct 3017 GGGTCTCGAGACCGCTGGCGGTGTGATGACTCC-CTCATCAAGAGGAACTCTACCATTCC 2959 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 | ||| || ||| ||| |||| || | || || || | | ||| || || Sbjct 2958 TACTAAGCAAACTCAAACCTTTACTACCTACGCTGACAACCAGCCAGGTGTCTTGATCCA 2899 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 | | ||| || || ||| | || || || || |||| ||||||| || | | Sbjct 2898 GGTCTATGAGGGTGAGAGAGCCATGACCAAGGACAACAATCTCCTTGGTAAATTCGAGCT 2839 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 || ||| | ||||| || | || || || ||||| || || ||||| |||||||| Sbjct 2838 CTCTGGCATTGCACCTGCCCCAAGAGGTGTCCCACAAATCGAGGTCACTTTTGATATCGA 2779 Query 552563 TGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || ||| | || || ||||| | || || || Sbjct 2778 TGCCAACGGCATTCTCAACGTTTCTGCTAGCGACAAGTC 2740 >seq5879 Length=52658 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || |||| || |||| || ||||| || ||||||||| | ||| | || || | Sbjct 27132 AAGTCACCCATGCCGTTGTAACAGTCCCAGCCTACTTTAATGACGCCCAAAGACAGGCCA 27073 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 |||| |||||| |||||||| || ||| | ||| | ||||||||||| || || | Sbjct 27072 CTAAGACCGCTGGAAAGATTGCTGGTCTAAATATCCTTAGAATTATCAATGAGCCCACAG 27013 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | ||||| | || ||||| ||||| || Sbjct 27012 CAGCTGCTATCGCCTATGGCCTTGACAA 26985 >seq1961 Length=16662 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| | || || | |||||| || ||| ||||| || ||||| || | |||| Sbjct 7712 CTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAG 7769 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| ||||| | ||| || || ||||| ||||| | ||||||||| || || || | Sbjct 7770 TTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATAC 7829 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 | || || |||||||| || ||| || ||| || | || | || | | || Sbjct 7830 CCTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCT-TGGCTCGACCTCT 7888 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || ||||||||||||||||| || || || |||||| Sbjct 7889 AGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCATA 7933 >seq3340 Length=33557 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| ||||| || ||||| ||| || || || || |||||||||| Sbjct 25802 ATGCCGTTGTCACTGTCCCAGCTTACTTTAACGACAGCCAGCGCCAGGCGACTAAAGATG 25861 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || | ||||| || || | |||||| | |||| |||||||| || ||||| || | Sbjct 25862 CCGGTCAAATTGCAGGCCTCGAGGTTCTTAGAGTTATAAATGAACCAACAGCTGCCGCTC 25921 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551 |||| || || || || || || | || ||||| Sbjct 25922 TTGCCTACGGCCTAGAGAAGAATGACGA-CAAGA 25954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028974726601750