Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3112 111 3e-19 >seq3112 Length=23135 Score = 111 bits (122), Expect = 3e-19 Identities = 336/512 (66%), Gaps = 9/512 (2%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || |||||||| || | | || || |||||||| ||||| |||| || || |||||| Sbjct 5792 TGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCTCC 5733 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGT-CAGGCCCATCTGTTCCAGCAG 47958 || ||| |||||||| | | ||| | | || || | | | || ||||||| Sbjct 5732 ATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGAC-AGCTCCACCAGCAG 5674 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG- 48017 |||| || || | || ||||| | |||| | || |||||| || || || Sbjct 5673 ACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGACT 5614 Query 48018 ACACGGGCAAAGCCTTTGTG-AGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || | | | | | || || |||| || || |||| ||||| | || || Sbjct 5613 ACAAGG--AAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGATT 5556 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | || || | | | |||||||| || ||| || | |||| | |||||| Sbjct 5555 TCATGCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTT---AAAGAGGAGACAGGCA 5499 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | || | |||||| || || ||||||| | ||| ||| |||||| ||| Sbjct 5498 AAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGC 5439 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 | || || | | || | |||||| || || ||||| || ||||||||||| |||||| Sbjct 5438 AAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCC 5379 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || | || || |||| ||| || | |||| | || |||||||| Sbjct 5378 TCTACGGCGGAAAAGGCCACTAGCCGCTCGGAAAAGTTTGAGTTCATATCCGAGATCCAT 5319 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCA 48348 || ||||| || || |||||||| | ||| Sbjct 5318 TTGAGGGCCCAATCGGCTTTCTTCTTCACGCA 5287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931462061728000