Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4645 181 7e-40 seq5171 149 4e-30 seq3785 127 1e-23 seq2310 116 2e-20 seq985 105 4e-17 seq2654 102 5e-16 seq774 102 5e-16 seq3340 93.3 3e-13 seq1961 89.7 3e-12 >seq4645 Length=15971 Score = 181 bits (200), Expect = 7e-40 Identities = 325/469 (69%), Gaps = 7/469 (1%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||| || || |||||| | | || ||||||||||| |||| || Sbjct 5280 GTTGAAATTATTGCCAACGATCAGGGTAATCGTATCACTCCATCATATGTCGCTTTCACC 5339 Query 474449 ---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| ||||| ||| ||||| || ||||| ||| ||||| |||| ||||| | Sbjct 5340 CTAGAAGGTGAACGTCTCATTGGTGACGCTGCAAAAAATCAATTGACATCCAATCCAGAG 5399 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 ||||| | ||||| | ||| | | |||||| | | ||||| |||| ||||||||| Sbjct 5400 AATACAGTCTTTGACGTAAAACGTATCATTGGTAGAACATTTGACGATAAAACTGTCCAA 5459 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||||| || ||| || | || || || || ||| || ||| || ||| Sbjct 5460 GCTGATTTGAAGCATCTCCCATACAAAGTCATTGATAAAAATGGAAAGCCAACAATTGAA 5519 Query 474626 GCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT-TT 474684 | | || |||| | || ||| | || || |||| || |||||||| || Sbjct 5520 GTTAGCGTCGGCAGTGAGAAAAAGATATTCGCCCCTGAGGAAATCTCCGCAATGGTTCTT 5579 Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAA 474743 || |||||||| ||| ||| |||| |||||| |||||| | ||| |||| || Sbjct 5580 AGT-AAAATGAAGGAAATCGCTGAAGCATACCTTGGA-AAGAAGGTCACTCATGCTGTTG 5637 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | ||||| ||||| || ||||| || ||||||||||||| || || ||||| || | || Sbjct 5638 TAACTGTCCCAGCCTACTTTAACGACGCTCAACGTCAAGCTACAAAGGATGCCGGTACAA 5697 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || | ||||| ||||| | | || ||||||||||| || ||||| || Sbjct 5698 TTTCTGGTCTCAATGTCCTTAGAATCATTAATGAACCTACTGCAGCAGC 5746 Score = 123 bits (136), Expect = 2e-22 Identities = 322/488 (66%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 || ||||| ||||| || || || ||| ||||||||||| || || | |||| || Sbjct 6195 GTTCATGAGATTGTCCTGGTTGGTGGTAGTACAAGAATTCCCAAGATTCAACAAATTGTT 6254 Query 475754 TCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCA 475813 | || ||| | || ||| || || | | || | || || |||||||||||||| Sbjct 6255 AAAGAATTCTTTGACGGCAAAGAGCCAAGTAGAGGTATTAACCCAGATGAAGCTGTTGCT 6314 Query 475814 TATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAAT 475873 ||||| |||||||| || || | | || | ||| | || || ||| | | | Sbjct 6315 TATGGCGCTGCTGTTCAGGCTGGTGTTATTGGCGGTGC-TGAG----GATACTGGAGATT 6369 Query 475874 ATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATG 475933 | || ||| | || || ||| | | || ||| |||| || || || || ||||| Sbjct 6370 -TGGTTCTTTTGGATGTCTGCCCATTGACTTTGGGTATTGAGACTGTCGGGGGTGTTATG 6428 Query 475934 ACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACT 475993 || || | || |||||||| ||| || ||||| || |||| || ||||| Sbjct 6429 ACCAAGTTGATCCCAAGAAATACCGTTATTCCCACTAAAAAGTCGCAAGTCTTCTCCACA 6488 Query 475994 TATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACT 476053 | | | || ||| ||||||| ||||| ||| ||| || |||||| || | | || Sbjct 6489 GCTGCCAACAACCAACCAACTGTGACCATTCAAGTCTACGAGGGTGAACGATCAATGACC 6548 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 || || ||| || | || | || |||| |||||||| ||||||||||| Sbjct 6549 AAGGACAATCACTTTTTGGGCAAATTCGATCTCACCGGTATTCCAGAAGCTCCCAGAGGC 6608 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 || || |||||||| || || ||||| ||||| | |||||||| | || ||| | ||| Sbjct 6609 GTCCCACAAATTGAGGTCACCTTTGAGATTGACGTCAATGGTATCTTGAAGGTTTCCGCT 6668 Query 476174 TGTGATAA 476181 ||||| Sbjct 6669 GAAGATAA 6676 >seq5171 Length=25613 Score = 149 bits (164), Expect = 4e-30 Identities = 166/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 480554 AAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||| | ||| || |||||||| || ||| |||| ||| ||| ||||||| ||||||| Sbjct 8027 AAGTCTGAGGACGAGATGAAGGGTTGACTC-CTTTTGAAT-ATTGTAATCAGATAGAGTT 8084 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| |||||||||||| ||||| || || || | || || ||||| |||||||| ||| Sbjct 8085 CTGCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCT 8144 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||||||||| ||||||| || || || |||| | | | || ||| Sbjct 8145 TCCTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGG 8204 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||||||||| || ||||| || || ||||| || Sbjct 8205 GTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTG 8242 >seq3785 Length=17747 Score = 127 bits (140), Expect = 1e-23 Identities = 290/425 (68%), Gaps = 21/425 (5%) Strand=Plus/Minus Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || ||| | ||||||| ||||| |||||||| || || ||||| || | | ||||| Sbjct 14612 AACACTGTATTTGATGTCAAAAGGTTGATTGGGCGCAAGTTTGACGACCCTATCGTCCAG 14553 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 |||||| |||| ||| ||||||| | || || | | |||| || | ||||| Sbjct 14552 AAGGATATGAGTCAGTGGTCTTTTAACATCATCAACGATAATGGTCGACTCAAAATAGAG 14493 Query 474626 GC--AATACAC---GCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 | | | | | |||||| | || ||| || ||| || | || |||| Sbjct 14492 GTTGAGTTCGAAGGGAAGGTGAGATCCTAC----TTC-CCTGAAGAATTGTCAGGAATGA 14438 Query 474681 TTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGC 474738 | || ||||||||| | | || ||| | | |||||| | || ||| | ||||| Sbjct 14437 TCTTGAAGAAAATGAAAGAGATAGCAGAGA-CGT-TCTTGGGAACGAGAGTGAACGATGC 14380 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 ||| ||||| ||||| || || ||||| ||| || | ||||| || || ||||| || Sbjct 14379 AGTTATTACAGTTCCTGCCTACTTTAACGATAGCCAGAGACAAGCTACCAAGGATGCTGG 14320 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | |||||| || || ||||||||||| ||||| |||||||| ||||||||||| ||| | Sbjct 14319 AGCAATTGCTGGCCTCAATGTTTTACGAATTATAAATGAACCGACAGCAGCCGCCCTTTC 14260 Query 474859 TTATGGTCT---TGATAAGAATTCTGACA--AAGAAGTAAATGTTTTAATCTTTGATTGT 474913 || ||||| ||||| || || | || ||| |||||| ||||||||| | Sbjct 14259 CTACGGTCTCAACAATAAGGATATAGATATTGAGCAGT--GTGTTTTGATCTTTGATCTT 14202 Query 474914 GGAGG 474918 ||||| Sbjct 14201 GGAGG 14197 >seq2310 Length=6049 Score = 116 bits (128), Expect = 2e-20 Identities = 389/591 (66%), Gaps = 16/591 (3%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||||| || |||||| | || || || ||| || || | ||| | ||| |||| || Sbjct 4202 TGCAATCGGAATTGATCTCGGTACAACCTACTCATGCGTTGGTGTCTTCCAACATGGCAA 4143 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||||| |||||||| ||||| || || ||||| || ||||| || ||| ||| || Sbjct 4142 GGTAGAAATCATTGCCAACGACCAGGGCAACAGAACCACTCCATCGTACGTTGGTTTCAC 4083 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || ||| | || || || |||| || | |||| || || || || Sbjct 4082 CGATACAGAAAGGTTGATCGGTGACTCTGCCAAGAACCAAGTCGCCATGAACCCAACCAA 4023 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | || ||||| || | ||||| || | || || || || || ||| ||||| Sbjct 4022 CACCGTCTTCGATGCCAAGCGTTTGATCGGAAGAAAGTTCGACGACTCCTATGTTCAATC 3963 Query 474568 TGATATGCGTCATTGGCCTTTTA-AGGTGATAA-ATGTTGGTGGTAAACCATATATAGAA 474625 ||||||| |||||||| || | || || ||| | | | | ||| | || | Sbjct 3962 TGATATGAAGCATTGGCCATTCAGAGTTGTTAACAAG--GACACCAGACCCAAGATCGTC 3905 Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | || |||| | ||||| ||| | || | || ||| | || || ||||| | Sbjct 3904 GTCCAGTACAAG--GGTGAGGACAAAGAGTTCTTCCCTGAAGAGATCAGCTCCATGGTCT 3847 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | ||| ||||| | || || ||| | || || ||| |||| || | |||||||| Sbjct 3846 TGATCAAGATGAAGGAGACAGCTGAG-GCCTACCTCGGA-AAGACTGTGTCAGATGCAGT 3789 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 | || || || || || || ||||| ||| | ||||| ||||||||||| || Sbjct 3788 CGTAACCGTCCCTGCCTACTTCAATGACAGTCAGAGACAAGCTACTAAAGATGCAGGTGT 3729 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||| | || || || | || || || ||||| || || || || | ||||| Sbjct 3728 CATTGCTGGTATCAACGTGTTGAGAATCATCAACGAACCCACTGCCGCAGCTATCGCTTA 3669 Query 474862 TGGTCTTGATAAGAA-TTCTG-ACAAAGAAGTAAATGTTTTAATCTTTGAT 474910 ||| | || ||||| || | || ||| | || ||| | ||||||||| Sbjct 3668 CGGTTTGGACAAGAAGGTCGGCACTGAGAGG--AACGTTCTCATCTTTGAT 3620 >seq985 Length=55867 Score = 105 bits (116), Expect = 4e-17 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 474716 CTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775 || |||||| |||||||||| ||||| || ||||||||||| ||||| ||||| ||| | Sbjct 40444 CTCGGACAAAAAGTAACTGAGGCAGTCATCACTGTTCCAGCGTATTTCAATGACTCTGAG 40385 Query 474776 CGTCAAGCAACTAAAGATG-CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAA 474834 ||||| || |||| ||| ||||||| || ||||| || |||| ||||| | || Sbjct 40384 CGTCAGGCTACTATCAATGCCGGGAAG-ATCGCAGGACTCGATGTCAAGCGTATCGTCAA 40326 Query 474835 TGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| || |||||||| || || || || || Sbjct 40325 TGAGCCTACAGCAGCAGCTCTCGCATACGG 40296 >seq2654 Length=8103 Score = 102 bits (112), Expect = 5e-16 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||||| || |||||| | || || || ||| || || | ||| | ||| |||| || Sbjct 318 TGCAATCGGAATTGATCTCGGTACAACCTACTCATGCGTTGGTGTCTTCCAACATGGCAA 259 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||||| |||||||| ||||| || || ||||| || ||||| || ||| ||| || Sbjct 258 GGTAGAAATCATTGCCAACGACCAGGGCAACAGAACCACTCCATCGTACGTTGGTTTCAC 199 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || ||| | || || || |||| || | |||| || || || || Sbjct 198 CGATACAGAAAGGTTGATCGGTGACTCTGCCAAGAACCAAGTCGCCATGAACCCAACCAA 139 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | || ||||| || | ||||| || | || || || || || |||| ||||| Sbjct 138 CACCGTCTTCGATGCCAAGCGTTTGATCGGAAGAAAGTTCGACGACTCCTCTGTTCAATC 79 Query 474568 TGATATGCGTCATTGGCCTTT 474588 ||||||| |||||||| || Sbjct 78 TGATATGAAGCATTGGCCATT 58 >seq774 Length=16834 Score = 102 bits (112), Expect = 5e-16 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||||| || |||||| | || || || ||| || || | ||| | ||| |||| || Sbjct 299 TGCAATCGGAATTGATCTCGGTACAACCTACTCATGCGTTGGTGTCTTCCAACATGGCAA 240 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||||| |||||||| ||||| || || ||||| || ||||| || ||| ||| || Sbjct 239 GGTAGAAATCATTGCCAACGACCAGGGCAACAGAACCACTCCATCGTACGTTGGTTTCAC 180 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || ||| | || || || |||| || | |||| || || || || Sbjct 179 CGATACAGAAAGGTTGATCGGTGACTCTGCCAAGAACCAAGTCGCCATGAACCCAACCAA 120 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | || ||||| || | ||||| || | || || || || || |||| ||||| Sbjct 119 CACCGTCTTCGATGCCAAGCGTTTGATCGGAAGAAAGTTCGACGACTCCTCTGTTCAATC 60 Query 474568 TGATATGCGTCATTGGCCTTT 474588 ||||||| |||||||| || Sbjct 59 TGATATGAAGCATTGGCCATT 39 >seq3340 Length=33557 Score = 93.3 bits (102), Expect = 3e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| ||||| || ||||| || || || || || |||||||||| Sbjct 25802 ATGCCGTTGTCACTGTCCCAGCTTACTTTAACGACAGCCAGCGCCAGGCGACTAAAGATG 25861 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||||||| || | ||| | | |||| |||||||||||||| ||||| | Sbjct 25862 CCGGTCAAATTGCAGGCCTCGAGGTTCTTAGAGTTATAAATGAACCAACAGCTGCCGCTC 25921 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAA 474885 |||| || || || || |||||| ||||| Sbjct 25922 TTGCCTACGGCCTAGAGAAGAATGACGACAA 25952 >seq1961 Length=16662 Score = 89.7 bits (98), Expect = 3e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 |||||||| ||||| | |||||| |||||||| ||||||||||| ||||| || || Sbjct 7766 AGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 7825 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGAC 480697 || || ||||||||||||||||| |||||| Sbjct 7826 ATACCCTCCTTGTCTTGAATCTTGGTTTTGAC 7857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267918613774100